Table 1.
SNPs studied in the 9p21.3 region.
| S. No. | SNP ID | Chromosomal positiona | Gene view | Functional consequence | Minor allele and global frequency |
|---|---|---|---|---|---|
| 1 | rs1004638 (T/A) | 22115590 | CDKN2B-AS1 | Intron variant | A- 0.31 |
| 2 | rs10116277 (T/G) | 22081398 | CDKN2B-AS1 | Intron variant | G- 0.323 |
| 3 | rs1011970 (G/T) | 22062135 | CDKN2B-AS1 | Intron variant | T- 0.247 |
| 4 | rs1063192 (A/G) | 22003368 | CDKN2B-AS1 | Intron variant, UTR variant 3′ | G- 0.205 |
| 5 | rs10757272 (C/T) | 22088261 | CDKN2B-AS1 | Intron variant | T- 0.45 |
| 6 | rs10757274 (A/G) | 22096056 | CDKN2B-AS1 | Intron variant | G- 0.404 |
| 7 | rs10757278 (A/G) | 22124478 | Near CDKN2B-AS1 | Intron variant | G- 0.408 |
| 8 | rs10757283 (C/T) | 22134173 | Near CDKN2B-AS1 | Intron variant | T- 0.497 |
| 9 | rs10811661 (T/C) | 22134095 | Near CDKN2B-AS1 | Intron variant | C- 0.176 |
| 10 | rs1333040 (T/C) | 22083405 | CDKN2B-AS1 | Intron variant | C- 0.383 |
| 11 | rs1333042 (G/A) | 22103814 | CDKN2B-AS1 | Intron variant | A- 0.321 |
| 12 | rs1333045 (T/C) | 22119196 | CDKN2B-AS1 | Intron variant | C- 0.498 |
| 13 | rs1333048 (A/C) | 22125348 | Near CDKN2B-AS1 | Intron variant | C- 0.442 |
| 14 | rs1333049 (G/C) | 22125504 | Near CDKN2B-AS1 | Intron variant | C- 0.418 |
| 15 | rs16905599 (G/A) | 22069145 | CDKN2B-AS1 | Intron variant | A- 0.190 |
| 16 | rs2383206 (A/G) | 22115027 | CDKN2B-AS1 | Intron variant | G- 0.487 |
| 17 | rs2383207 (G/A) | 22115960 | CDKN2B-AS1 | Intron variant | A- 0.310 |
| 18 | rs2383208 (A/G) | 22132077 | Near CDKN2B-AS1 | Intron variant | G- 0.210 |
| 19 | rs2811712 (A/G) | 21998036 | CDKN2B-AS1 | Intron variant | G- 0.160 |
| 20 | rs2891169 (A/G) | 22131826 | Near CDKN2B-AS1 | Intron variant | G- 0.493 |
| 21 | rs3731239 (A/G) | 21974219 | CDKN2A | Intron variant | G- 0.175 |
| 22 | rs4977574 (A/G) | 22098575 | CDKN2B-AS1 | Intron variant | G- 0.395 |
| 23 | rs4977756 (A/G) | 22068653 | CDKN2B-AS1 | Intron variant | G- 0.288 |
| 24 | rs564398 (T/C) | 22029548 | CDKN2B-AS1 | Intron variant, nc transcript variant | C- 0.184 |
| 25 | rs615552 (T/C) | 22026078 | CDKN2B-AS1 | Intron variant | C- 0.195 |
| 26 | rs6475606 (T/C) | 22081851 | CDKN2B-AS1 | Intron variant | C-0.322 |
| 27 | rs7023329 (A/G) | 21816529 | MTAP | Intron variant | G- 0.449 |
| 28 | rs7865618 (A/G) | 22031006 | CDKN2B-AS1 | Intron variant | G- 0.188 |
| 29 | rs944797 (T/C) | 22115287 | CDKN2B-AS1 | Intron variant | C- 0.487 |
| 30 | rs9632884 (C/G) | 22072302 | CDKN2B-AS1 | Intron variant | G- 0.304 |
SNP, single-nucleotide polymorphism.
a
Genome build is GRCh38.p12 (taken from dbSNP site).