TABLE 2.
Genome structure comparison for currently known C. gilardii genomes determined with both the PATRIC comprehensive genome analysis service and the latest GenBank genome update
| Strain | Strain isolation source |
Status | Genome size (Mbp) |
GC content (%) |
No. of chromosomes/ no. of plasmids |
No. ofa
: |
Latest update in GenBank (yr/day/mo) or source |
||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CDS | rRNA | tRNA | Other RNAs |
Total genes | |||||||
| CR3b | Soil with natural asphalt (CA, USA) |
Complete | 5.58 | 67.55 | 2/0 | 5,412 (4,401) | 12 | 59 | 0 (3) | 5,483 (4,992) | 2017/04/11 |
| JZ4c | Plant root endophyte (Jizan, Saudi Arabia) |
Draft | 5.56 | 67.70 | 5,042 (4,772) | 9 (10) | 53 | 0 (3) | 5,104 (4,889) | 2017/04/12 | |
| W2-2 | Surface pond water (CA, USA) |
Draft | 5.60 | 67.94 | 5,073 (4,848) | 4 | 54 (53) | 0 (3) | 5,131 (4,908) | This study | |
a
When the values for the numbers of coding DNA sequences (CDS), rRNAs, tRNAs, other RNAs, or total genes were different between the PATRIC service and the GenBank database, the value from PATRIC is shown and the value from GenBank is shown in parentheses. In general, these differences occurred mostly for coding DNA sequences, and, thus, total genes and are related to the different scoring of pseudogenes (Rebecca Wattam, University of Virginia, personal communication).
c
C. gilardii JZ4 (10) (GenBank accession number LVXY00000000).