Binding of PrPSc to SCL does not alter strain emergence from a mixture. Results of Western blotting (A and B) and migration analysis (C and D) of PrPSc from PMCAsi reaction mixtures seeded with HY and DY bound separately to SCL (A and C) or bound to SCL as a mixture (B and D) are shown. Negative-control brain PMCA reactions did not amplify PrPSc (A and B, lanes 1). Positive-control PMCA reaction mixtures seeded with either HY-infected (lane 8) or DY-infected (lane 2) brain homogenate maintained the 21-kDa (lane 15) or 19-kDa (lane 9) strain-specific unglycosylated PrPSc migration pattern, respectively, after 5 rounds of amplification. Positive-control PMCAsi reaction mixtures seeded with both unbound HY and DY resulted in the emergence of HY PrPSc at round 5 (lanes 3 to 7). Experimental PMCAsi reaction mixtures seeded with both SCL-HY and SCL-DY bound separately (A, lanes 10 to 14) or together (B, lanes 10 to 14) resulted in HY PrPSc emerging by round 5. Migration of 19-kDa and 21-kDa molecular weight marker is indicated on the left of the Western blot. This experiment was repeated a minimum of 3 times with similar results.