Table 2.

DNA barcodes of accepted Alternaria spp.

Species	Section	Isolates1	GenBank accession numbers2					References
			ITS	gapdh	rpb2	tef1	ATPase
Alternaria abundans	Chalastospora	CBS 534.83T	JN383485	KC584154	KC584448	KC584707	JQ671802	Woudenberg et al., 2013, Deng et al., 2018
A. acalyphicola	Porri	CBS 541.94T	KJ718097	KJ717952	KJ718271	KJ718446	–	Woudenberg et al. (2014)
A. aconidiophora	Infectoriae	FMR 17111T	LR133931	LR133965	LR133967	LR133968	LR133969	Present study
A. agerati	Porri	CBS 117221	KJ718098	KJ717953	KJ718272	KJ718447	–	Woudenberg et al. (2014)
A. agripestis	Porri	CBS 577.94T	KJ718099	JQ646356	KJ718273	KJ718448	–	Woudenberg et al. (2014)
A. allii	Porri	CBS 107.28T	KJ718100	KJ717954	KJ718274	KJ718449	–	Woudenberg et al. (2014)
A. alstroemeriae	Alternaria	CBS 118809T	KP124297	KP124154	KP124765	KP125072	–	Woudenberg et al. (2015)
A. altcampina	Pseudoalternaria	FMR 16476T	LR133895	LR133900	–	–	LR133906	Present study
A. alternantherae	Althernantherae	CBS 124392	KC584179	KC584096	KC584374	KC584633	–	Woudenberg et al. (2013)
A. alternariacida	Porri	CBS 105.51T	KJ718105	KJ717959	KJ718279	KJ718454	–	Woudenberg et al. (2014)
A. alternariae	Ulocladium	CBS 126989T	AF229485	AY278815	KC584470	KC584730	–	Woudenberg et al. (2013)
A. alternarina	Infectoriae	CBS 119396T	JQ693648	JQ646289	JQ905199	LR134367	JQ671817	Poursafar et al. (2018), Geng et al. (unpubl. data), present study
A. alternata	Alternaria	CBS 916.96T	AF347031	AY278808	KC584375	KC584634	–	Woudenberg et al. (2013)
A. anagallidis	Porri	CBS 117128	KJ718106	JQ646338	KJ718280	EU130544	–	Woudenberg et al. (2014)
A. anigozanthi	Eureka	CBS 121920T	KC584180	KC584097	KC584376	KC584635	–	Woudenberg et al. (2013)
A. anodae	Porri	PPRI 12376	KJ718110	KJ717963	KJ718284	KJ718458	–	Woudenberg et al. (2014)
A. aragakii	Porri	CBS 594.93T	KJ718111	KJ717964	KJ718285	KJ718459	–	Woudenberg et al. (2014)
A. arborescens	Alternaria	CBS 102605T	AF347033	AY278810	KC584377	KC584636	–	Woudenberg et al. (2013)
A. arbusti	Infectoriae	CBS 596.93T	JQ693644	JQ646365	LR134184	–	JQ671940	Poursafar et al. (2018), present study
A. argyranthemi		CBS 116530T	KC584181	KC584098	KC584378	KC584637	–	Woudenberg et al. (2013)
A. argyroxiphii	Porri	CBS 117222T	KJ718112	JQ646350	KJ718286	KJ718460	–	Woudenberg et al. (2014)
A. armoraciae	Chalastospora	CBS 118702T	KC584182	KC584099	KC584379	KC584638	LR134098	Woudenberg et al. (2013), present study
A. arrhenatheri	Pseudoalternaria	LEP 140372T	JQ693677	JQ693635	–	–	JQ693603	Poursafar et al. (2018)
A. aspera	Pseudoulocladium	CBS 115269T	KC584242	KC584166	KC584474	KC584734	–	Woudenberg et al. (2013)
A. atra	Ulocladioides	CBS 195.67T	AF229486	KC584167	KC584475	KC584735	–	Woudenberg et al. (2013)
A. avenicola	Panax	CBS 121459T	KC584183	KC584100	KC584380	KC584639	–	Woudenberg et al. (2013)
A. axiaeriisporifera	Gypsophilae	CBS 118715T	KC584184	KC584101	KC584381	KC584640	–	Woudenberg et al. (2013)
A. azadirachtae	Porri	CBS 116444T	KJ718115	KJ717967	KJ718289	KJ718463	–	Woudenberg et al. (2014)
A. bataticola	Porri	CBS 531.63T	KJ718117	JQ646349	KJ718291	KJ718465	–	Woudenberg et al. (2014)
A. betae-kenyensis	Alternaria	CBS 118810T	KP124419	KP124270	KP124888	KP125197	–	Woudenberg et al. (2015)
A. blumeae	Porri	CBS 117364T	KJ718126	AY562405	KJ718300	KJ718474	–	Woudenberg et al. (2014)
A. bornmuelleri	Undifilum	DAOM 231361T	FJ357317	FJ357305	KC584491	KC584751	–	Woudenberg et al. (2013)
A. botryospora	Embellisioides	CBS 478.90T	AY278844	AY278831	KC584461	KC584720	–	Woudenberg et al. (2013)
A. botrytis	Ulocladium	CBS 197.67T	KC584243	KC584168	KC584476	KC584736	–	Woudenberg et al. (2013)
A. brassicae		CBS 116528	KC584185	KC584102	KC584382	KC584641	–	Woudenberg et al. (2013)
A. brassicaepekinensis	Ulocladioides	CBS 121493T	KC584244	KC584170	KC584478	KC584738	–	Woudenberg et al. (2013)
A. brassicicola	Brassicicola	CBS 118699	JX499031	KC584103	KC584383	KC584642	–	Woudenberg et al. (2013)
A. brassicifolii	Pseudoalternaria	CNU 111118T	JQ317188	KM821537	–	–	KY412558	Deng et al. (2018)
A. breviramosa	Chalastospora	CBS 121331T	FJ839608	KC584148	KC584442	KC584700	LR134099	Woudenberg et al. (2013), present study
A. broccoli-italicae	Infectoriae	CBS 118485T	KM821536	KM821538	LR134194	LR134262	KY412557	Deng et al. (2018), present study
A. burnsii	Alternaria	CBS 107.38T	KP124420	JQ646305	KP124889	KP125198	–	Woudenberg et al. (2015)
A. caespitosa	Infectoriae	CBS 177.80T	KC584250	KC584178	KC584492	KC584752	LR134114	Woudenberg et al. (2013), present study
A. calendulae	Porri	CBS 224.76T	KJ718127	KJ717977	KJ718301	KJ718475	–	Woudenberg et al. (2014)
A. californica	Infectoriae	CBS 119409T	JQ693645	JQ646285	LR134181	LR134245	JQ671813	Poursafar et al. (2018), present study
A. calycipyricola	Panax	CBS 121545T	KC584186	KC584104	KC584384	KC584643	–	Woudenberg et al. (2013)
A. cantlous	Ulocladioides	CBS 123007T	KC584245	KC584171	KC584479	KC584739	–	Woudenberg et al. (2013)
A. capsici-annui	Ulocladium	CBS 504.74	KC584187	KC584105	KC584385	KC584644	–	Woudenberg et al. (2013)
A. caricis	Nimbya	CBS 480.90T	AY278839	AY278826	KC584467	KC584726	JQ671780	Woudenberg et al., 2013, Deng et al., 2018
A. carotiincultae	Radicina	CBS 109381T	KC584188	KC584106	KC584386	KC584645	–	Woudenberg et al. (2013)
A. carthami	Porri	CBS 635.80	KJ718131	KJ717981	KJ718305	KJ718479	–	Woudenberg et al. (2014)
A. carthamicola	Porri	CBS 117092T	KJ718134	KJ717984	KJ718308	KJ718482	–	Woudenberg et al. (2014)
A. cassiae	Porri	CBS 478.81	KJ718135	KJ717985	KJ718309	KJ718483	–	Woudenberg et al. (2014)
A. catananches	Porri	CBS 137456T	KJ718139	KJ717989	KJ718313	KJ718487	–	Woudenberg et al. (2014)
A. centaureae	Porri	CBS 116446T	KJ718140	KJ717990	KJ718314	KJ718488	–	Woudenberg et al. (2014)
A. cerasidanica	Infectoriae	CBS 121923T	LR135744	LR135747	LR135746	LR135745	LR135748	Present study
A. cesenica	Infectoriae	MFLUCC 13-0450T	KP711383	–	–	KP711386	–	Liu et al. (2015)
A. cetera	Chalastospora	CBS 121340T	JN383482	AY562398	KC584441	KC584699	LR134101	Woudenberg et al., 2013, Deng et al., 2018
A. chartarum	Pseudoulocladium	CBS 200.67T	AF229488	KC584172	KC584481	KC584741	–	Woudenberg et al. (2013)
A. cheiranthi	Cheiranthus	CBS 109384	AF229457	KC584107	KC584387	KC584646	–	Woudenberg et al. (2013)
A. chlamydospora	Phragmosporae	CBS 491.72T	KC584189	KC584108	KC584388	KC584647	–	Woudenberg et al. (2013)
A. chlamydosporigena	Embellisia	CBS 341.71	KC584231	KC584156	KC584451	KC584710	–	Woudenberg et al. (2013)
A. chlamydosporifera	Radicina	FMR 17360T	LR133924	LR133927	LR133926	LR133929	–	Present study
A. cichorii	Porri	CBS 102.33T	KJ718141	KJ717991	KJ718315	KJ718489	–	Woudenberg et al. (2014)
A. cinerariae	Sonchi	CBS 116495	KC584190	KC584109	KC584389	KC584648	–	Woudenberg et al. (2013)
A. cirsinoxia	Porri	CBS 113261T	KJ718143	KJ717993	KJ718317	KJ718491	–	Woudenberg et al. (2014)
A. citrullicola	Porri	CBS 103.32T	KJ718144	KJ717994	KJ718318	KJ718492	–	Woudenberg et al. (2014)
A. concatenata	Pseudoulocladium	CBS 120006T	KC584246	AY762950	KC584480	KC584740	–	Woudenberg et al. (2013)
A. conidiophora	Porri	CBS 137457T	KJ718145	KJ717995	-	KJ718493	–	Woudenberg et al. (2014)
A. conjuncta	Infectoriae	CBS 196.86T	FJ266475	AY562401	KC584390	KC584649	JQ671824	Woudenberg et al., 2013, Poursafar et al., 2018
A. conoidea	Brassicicola	CBS 132.89	AF348226	FJ348227	KC584452	KC584711	–	Woudenberg et al. (2013)
A. consortialis	Ulocladioides	CBS 104.31T	KC584247	KC584173	KC584482	KC584742	–	Woudenberg et al. (2013)
A. crassa	Porri	CBS 110.38T	KJ718147	KJ717997	KJ718320	KJ718495	–	Woudenberg et al. (2014)
A. cyamopsidis	Porri	CBS 364.67	KJ718156	KJ718003	KJ718329	KJ718504	–	Woudenberg et al. (2014)
A. cumini	Eureka	CBS 121329T	KC584191	KC584110	KC584391	KC584650	–	Woudenberg et al. (2013)
A. cucumerina	Porri	CBS 116114T	KJ718153	KJ718000	KJ718326	KJ718501	–	Woudenberg et al. (2014)
A. cucurbitae	Ulocladioides	CBS 483.81	FJ266483	AY562418	KC584483	KC584743	–	Woudenberg et al. (2013)
A. curvata	Infectoriae	FMR 16901T	LR133898	LR133899	LR133901	LR133902	LR133905	Present study
A. dactylidicola	Infectoriae	MFLUCC 15-0466T	KY703616	–	KY750720	–	–	Thambugala et al. (2017)
A. dauci	Porri	CBS 111.38T	KJ718158	KJ718005	KJ718331	KJ718506	–	Woudenberg et al. (2014)
A. daucicaulis	Infectoriae	CBS 119398T	JQ693653	JQ646294	LR134177	LR134241	JQ671822	Poursafar et al. (2018), present study
A. dennisii		CBS 476.90T	JN383488	JN383469	KC584454	KC584713	–	Woudenberg et al. (2013)
A. deserticola	Porri	CBS 110799T	KJ718249	KJ718077	KJ718424	KJ718595	–	Woudenberg et al. (2014)
A. dianthicola	Dianthicola	CBS 116491	KC584194	KC584113	KC584394	KC584653	–	Woudenberg et al. (2013)
A. dichondrae	Porri	CBS 200.74T	KJ718167	KJ718012	KJ718340	KJ718515	–	Woudenberg et al. (2014)
A. didymospora	Phragmosporae	CBS 766.79	FJ357312	FJ357300	KC584455	KC584714	JQ671796	Woudenberg et al., 2013, Deng et al., 2018
A. doliconidium	Alternaria	KUMCC 17-0263T	MG828864	–	–	–	–	Wanasinghe et al. (2018)
A. echinaceae	Porri	CBS 116117T	KJ718170	KJ718015	KJ718343	KJ718518	–	Woudenberg et al. (2014)
A. eichhorniae	Alternaria	CBS 489.92T	KC146356	KP124276	KP124895	KP125204	–	Woudenberg et al. (2015)
A. elegans	Dianthicola	CBS 109159T	KC584195	KC584114	KC584395	KC584654	–	Woudenberg et al. (2013)
A. ellipsoidea	Gypsophilae	CBS 119674T	KC584196	KC584115	KC584396	KC584655	–	Woudenberg et al. (2013)
A. embellisia	Embellisia	CBS 339.71	KC584230	KC584155	KC584449	KC584708	–	Woudenberg et al. (2013)
A. eryngii	Panax	CBS 121339	JQ693661	AY562416	KC584397	KC584656	–	Woudenberg et al. (2013)
A. ethzedia	Infectoriae	CBS 197.86T	AY278833	AY278795	KC584398	KC584657	JQ671805	Woudenberg et al., 2013, Poursafar et al., 2018
A. euphorbiicola	Euphorbiicola	CBS 119410	KJ718173	KJ718018	KJ718346	KJ718521	–	Woudenberg et al. (2014)
A. eureka	Eureka	CBS 193.86T	JN383490	JN383471	KC584456	KC584715	–	Woudenberg et al. (2013)
A. fimeti	Infectoriae	FMR 17110T	LR133920	LR133921	LR133923	LR133922	LR133925	Present study
A. forlicesenensis	Infectoriae	MFLUCC 13-0456T	KY769657	–	–	–	–	Thambugala et al. (2017)
A. frumenti	Infectoriae	CBS 119401T	JQ693654	JQ646295	LR134172	LR134370	JQ671823	Poursafar et al. (2018), present study
A. gaisen	Alternaria	CBS 632.93	KC584197	KC584116	KC584399	KC584658	–	Woudenberg et al. (2013)
A. geniostomatis	Eureka	CBS 118701T	KC584198	KC584117	KC584400	KC584659	–	Woudenberg et al. (2013)
A. gossypina	Alternaria	CBS 104.32T	KP124430	JQ646312	KP124900	KP125209	–	Woudenberg et al. (2015)
A. graminicola	Infectoriae	CBS 119400T	JQ693650	JQ646291	LR134180	LR134249	JQ671819	Poursafar et al. (2018), present study
A. grandis	Porri	CBS 109158T	KJ718239	JQ646341	KJ718414	EU130547	–	Woudenberg et al. (2014)
A. gypsophilae	Gypsophilae	CBS 107.41T	KC584199	KC584118	KC584401	KC584660	–	Woudenberg et al. (2013)
A. hampshirensis	Infectoriae	MFLUCC 17-0783T	MG828866	–	MG829247	–	–	Wanasinghe et al. (2018)
A. helianthiinficiens		CBS 208.86T	JX101649	KC584120	KC584403	EU130548	–	Woudenberg et al. (2013)
A. heterospora	Ulocladioides	CBS 123376T	KC584248	KC584176	KC584488	KC584748	–	Woudenberg et al. (2013)
A. hordeiaustralica	Infectoriae	CBS 119402T	JQ693641	JQ646283	LR134179	LR134243	JQ671811	Poursafar et al. (2018), present study
A. hordeicola	Infectoriae	CBS 121458T	JQ693642	JQ646284	LR134175	LR134371	JQ671812	Poursafar et al. (2018), present study
A. humuli	Infectoriae	CBS 119404T	JQ693652	JQ646293	LR134174	LR134199	JQ671821	Poursafar et al. (2018), present study
A. hyacinthi	Embellisioides	CBS 416.71T	KC584233	KC584158	KC584457	KC584716	–	Woudenberg et al. (2013)
A. incomplexa	Infectoriae	CBS 121330T	JQ693658	JQ646287	LR134185	LR134250	JQ671815	Poursafar et al. (2018), present study
A. indefessa	Cheiranthus	CBS 536.83T	KC584234	KC584159	KC584458	KC584717	–	Woudenberg et al. (2013)
A. infectoria	Infectoriae	CBS 210.86T	AF347034	AY278793	KC584404	KC584662	JQ671804	Woudenberg et al., 2013, Poursafar et al., 2018
A. inflata	Pseudoalternaria	FMR 16477 T	LR133930	LR133938	–	–	LR133966	Present study
A. intercepta	Infectoriae	CBS 119406T	JQ693656	JQ646297	LR134170	–	JQ671826	Poursafar et al. (2018), present study
A. ipomoeae	Porri	CBS 219.79T	KJ718175	KJ718020	KJ718348	KJ718523	–	Woudenberg et al. (2014)
A. iridiaustralis	Alternaria	CBS 118486T	KP124435	KP124284	KP124905	KP125214	–	Woudenberg et al. (2015)
A. japonica	Japonicae	CBS 118390	KC584201	KC584121	KC584405	KC584663	–	Woudenberg et al. (2013)
A. jacinthicola	Alternaria	CBS 133751T	KP124438	KP124287	KP124908	KP125217	–	Woudenberg et al. (2015)
A. jesenskae	Porri	CBS 133855T	KJ718177	KJ718022	KJ718350	KJ718525	–	Woudenberg et al. (2014)
A. juxtiseptata	Gypsophilae	CBS 119673T	KC584202	KC584122	KC584406	KC584664	–	Woudenberg et al. (2013)
A. kordkuyana	Pseudoalternaria	IRAN 16888FT	MF033843	MF033826	–	–	MF033860	Poursafar et al. (2018)
		FMR 17061	LR133970	LR133998	–	–	LR134001	Present study
		FMR 17372	LR133995	LR133997	–	–	LR133999	Present study
A. kulundii	Soda	CBS 137525T	KJ443262	KJ649618	KJ443176	KJ443219	–	Grum-Grzhimaylo et al. (2016)
A. lawrencei	Infectoriae	FMR 17004T	LR133907	LR133908	LR133911	LR133912	LR133914	Present study
A. leptinellae	Eureka	CBS 477.90T	KC584235	KC584160	KC584459	KC584718	–	Woudenberg et al. (2013)
A. leucanthemi	Teretispora	CBS 421.65T	KC584240	KC584164	KC584472	KC584732	–	Woudenberg et al. (2013)
A. limaciformis	Phragmosporae	CBS 481.81T	KC584203	KC584123	KC584407	KC584665	JQ671798	Woudenberg et al. (2013), Deng et al. (2018)
A. limicola	Euphorbiicola	CBS 483.90T	KJ718178	JQ646329	KJ718351	KJ718526	–	Woudenberg et al. (2014)
A. linariae	Porri	CBS 105.41T	KJ718180	KJ718024	KJ718353	KJ718528	–	Woudenberg et al. (2014)
A. longipes	Alternaria	CBS 540.94	AY278835	AY278811	KC584409	KC584667	–	Woudenberg et al. (2013)
A. lolii	Embellisioides	CBS 115266T	JN383492	JN383473	KC584460	KC584719	–	Woudenberg et al. (2013)
A. macrospora	Porri	CBS 117228T	KC584204	KC584124	KC584410	KC584668	–	Woudenberg et al. (2013)
A. malorum	Chalastospora	CBS 135.31	JQ693638	JQ646278	–	–	JQ671800	Poursafar et al. (2018)
		FMR 17369	LR134074	LR134077	–	–	LR134029	Present study
A. merytae	Infectoriae	CBS 119403T	JQ693651	JQ646292	LR134119	LR134198	JQ671820	Poursafar et al. (2018), present study
A. metachromatica	Infectoriae	CBS 553.94T	JQ693660	AY562404	JQ905189	FJ214931	JQ671809	Andersen et al., 2009, Poursafar et al., 2018, Geng et al. (unpubl. data)
A. mimicula	Brassicicola	CBS 118696T	FJ266477	AY562415	KC584411	KC584669	–	Woudenberg et al. (2013)
A. molesta	Phragmosporae	CBS 548.81T	KC584205	KC584125	KC584412	KC584670	–	Woudenberg et al. (2013)
A. montanica	Porri	CBS 121343T	KJ718194	KJ718033	KJ718367	KJ718541	–	Woudenberg et al. (2014)
A. montsantina	Infectoriae	FMR 17060T	LR133913	LR133915	LR133918	LR133919	LR133916	Present study
A. mouchaccae	Phragmosporae	CBS 119671T	KC584206	AY562399	KC584413	KC584671	–	Woudenberg et al. (2013)
A. multiformis	Ulocladioides	CBS 102060T	FJ266486	KC584174	KC584484	KC584744	–	Woudenberg et al. (2013)
A. multirostrata	Porri	CBS 712.68T	KJ718195	JQ646362	KJ718368	EU130546	–	Woudenberg et al. (2014)
A. murispora	Infectoriae	MFLU 14-0758T	NR_137964	–	–	–	–	Ariyawansa and Hyde (unpubl. data)
A. neoipomoeae	Porri	PPRI 11845T	KJ718198	KJ718036	KJ718371	KJ718544	–	Woudenberg et al. (2014)
A. nepalensis	Japonicae	CBS 118700T	KC584207	KC584126	KC584414	KC584672	–	Woudenberg et al. (2013)
A. nitrimali	Porri	CBS 109163T	KJ718201	JQ646358	KJ718374	KJ718547	–	Woudenberg et al. (2014)
A. nobilis	Gypsophilae	CBS 116490	KC584208	KC584127	KC584415	KC584673	–	Woudenberg et al. (2013)
A. novae-guineensis	Porri	CBS 116120T	KJ718202	KJ718039	KJ718375	KJ718548	–	Woudenberg et al. (2014)
A. novae-zelandiae	Infectoriae	CBS 119405T	JQ693655	JQ646296	LR134120	LR134197	JQ671825	Poursafar et al. (2018), present study
A. obclavata	Chalastospora	CBS 124120T	KC584225	KC584149	KC584443	KC584701	LR134100	Woudenberg et al. (2013), present study
A. obovoidea	Ulocladioides	CBS 101229	FJ266487	FJ266498	KC584485	KC584745	–	Woudenberg et al. (2013)
A. obtecta	Porri	CBS 117367	KJ718204	KJ718041	KJ718377	KJ718550	–	Woudenberg et al. (2014)
A. oregonensis	Infectoriae	CBS 542.94T	FJ266478	FJ266491	KC584416	KC584674	JQ671827	Woudenberg et al., 2013, Poursafar et al., 2018
A. oudemansii	Ulocladium	CBS 114.07T	FJ266488	KC584175	KC584486	KC584746	–	Woudenberg et al. (2013)
A. panax	Panax	CBS 482.81	KC584209	KC584128	KC584417	KC584675	–	Woudenberg et al. (2013)
A. papavericola	Crivellia	CBS 116606T	FJ357310	FJ357298	KC584446	KC584705	–	Woudenberg et al. (2013)
A. paralinicola	Porri	CBS 116652T	KJ718206	KJ718043	KJ718379	KJ718552	–	Woudenberg et al. (2014)
A. passiflorae	Porri	CBS 113.38	KJ718207	JQ646353	KJ718380	KJ718553	–	Woudenberg et al. (2014)
A. parvicaespitosa	Pseudoalternaria	LEP 014858T	MF033859	MF033842	–	–	KJ908217	Poursafar et al. (2018)
A. penicillata	Crivellia	CBS 116608T	FJ357311	FJ357299	KC584440	KC584698	–	Woudenberg et al. (2013)
A. perpunctulata	Althernantherae	CBS 115267T	KC584210	KC584129	KC584418	KC584676	–	Woudenberg et al. (2013)
A. petroselini	Radicina	CBS 112.41T	KC584211	KC584130	KC584419	KC584677	–	Woudenberg et al. (2013)
A. petuchovskii	Soda	CBS 137517T	KJ443254	KJ649616	KJ443170	KJ443211	–	Grum-Grzhimaylo et al. (2016)
A. peucedani		CNU 111485T	KF728231	KF889361	–	–	–	Deng et al. (2014)
A. photistica	Panax	CBS 212.86T	KC584212	KC584131	KC584420	KC584678	JQ671807	Woudenberg et al., 2013, Deng et al., 2018
A. phragmospora	Phragmosporae	CBS 274.70T	JN383493	JN383474	KC584462	KC584721	–	Woudenberg et al. (2013)
A. pipionipisi	Porri	CBS 116115T	KJ718214	KJ718049	KJ718387	KJ718560	–	Woudenberg et al. (2014)
A. planifunda	Embellisioides	CBS 537.83T	FJ357315	FJ357303	KC584463	KC584722	–	Woudenberg et al. (2013)
A. poaceicola	Infectoriae	MFLUCC 13-0346T	KY026587	–	KY460971	–	–	Thambugala et al. (2017)
A. pobletensis	Chalastospora	FMR 16448T	LR133896	LR133897	–	–	LR133903	Present study
A. porri	Porri	CBS 116699T	KJ718218	KJ718053	KJ718391	KJ718564	–	Woudenberg et al. (2014)
A. proteae	Embellisioides	CBS 475.90T	AY278842	KC584161	KC584464	KC584723	–	Woudenberg et al. (2013)
A. protenta	Porri	CBS 116696	KJ718221	JQ646335	KJ718394	KJ718567	–	Woudenberg et al. (2014)
A. pseudorostrata	Porri	CBS 119411T	JN383483	AY562406	KC584422	KC584680	–	Woudenberg et al. (2013)
A. pseudoventricosa	Infectoriae	FMR 16900T	LR133928	LR133935	LR133934	LR133936	LR133937	Present study
A. radicina	Radicina	CBS 245.67T	KC584213	KC584133	KC584423	KC584681	–	Woudenberg et al. (2013)
A. ranunculi	Porri	CBS 116330T	KJ718225	KJ718058	KJ718398	KJ718571	–	Woudenberg et al. (2014)
A. ricini	Porri	CBS 215.31T	KJ718226	KJ718059	KJ718399	KJ718572	–	Woudenberg et al. (2014)
A. rosae	Pseudoalternaria	CBS 121341T	JQ646279	JQ646279	–	–	JQ671803	Poursafar et al. (2018)
		FMR 15720	LR134076	LR134070	–	–	LR134004	Present study
		FMR 17376	LR134071	LR13403	–	–	LR134003	Present study
		FMR 17377	LR134073	LR134072	–	–	LR134028	Present study
A. roseogrisea	Infectoriae	CBS 121921T	LR134102	LR134103	LR134192	LR134260	LR134104	Present study
A. rostellata	Porri	CBS 117366T	KJ718229	JQ646332	KJ718402	KJ718575	–	Woudenberg et al. (2014)
A. saponariae	Gypsophilae	CBS 116492	KC584215	KC584135	KC584425	KC584683	–	Woudenberg et al. (2013)
A. scirpicola	Nimbya	CBS 481.90	KC584237	KC584163	KC584469	KC584728	JQ671781	Woudenberg et al., 2013, Deng et al., 2018
A. scirpinfestans	Nimbya	EGS 49-185T	JN383499	JN383480	–	JQ672404	JQ671783	Lawrence et al. (2012), Lawrence et al. (unpubl. data)
A. scirpivora	Nimbya	EGS 50-021T	JN383500	JN383481	–	JQ672405	JQ671782	Lawrence et al. (2012), Lawrence et al. (unpubl. data)
A. scorzonerae	Porri	CBS 103.46	KJ718190	JQ646363	KJ718363	KJ718537	–	Woudenberg et al. (2014)
A. selini	Radicina	CBS 109382T	AF229455	AY278800	KC584426	KC584684	–	Woudenberg et al. (2013)
A. sennae	Porri	CBS 477.81T	KJ718230	JQ646344	KJ718403	EU130543	–	Woudenberg et al. (2014)
A. septospora	Pseudoulocladium	CBS 109.38	FJ266489	FJ266500	KC584487	KC584747	–	Woudenberg et al. (2013)
A. septorioides	Brassicicola	CBS 106.41T	KC584216	KC584136	KC584427	KC584685	–	Woudenberg et al. (2013)
A. sesami	Porri	CBS 115264	JF780939	KJ718061	KJ718405	KJ718577	–	Woudenberg et al. (2014)
A. shukurtuzii	Soda	CBS 137520T	KJ443257	KJ649620	KJ443172	KJ443214	–	Grum-Grzhimaylo et al. (2016)
A. sidae	Porri	CBS 117730T	KJ718232	KJ718062	KJ718406	KJ718578	–	Woudenberg et al. (2014)
A. simsimi	Dianthicola	CBS 115265T	JF780937	KC584137	KC584428	KC584686	–	Woudenberg et al. (2013)
A. silybi	Porri	CBS 134092T	KJ718233	KJ718063	KJ718407	KJ718579	–	Woudenberg et al. (2014)
A. slovaca	Infectoriae	CBS 567.66T	KC584226	KC584150	KC584444	KC584702	LR134368	Woudenberg et al. (2013), present study
A. smyrnii	Radicina	CBS 109380	AF229456	KC584138	KC584429	KC584687	–	Woudenberg et al. (2013)
A. solani	Porri	CBS 106.21	KJ718236	KJ718066	KJ718410	KJ718582	–	Woudenberg et al. (2014)
A. solani-nigri	Porri	CBS 113403	KJ718243	KJ718071	KJ718418	KJ718589	–	Woudenberg et al. (2014)
A. soliaridae		CBS 118387T	KC584218	KC584140	KC584431	KC584689	–	Woudenberg et al. (2013)
A. solidaccana	Brassicicola	CBS 118698T	KC584219	KC584141	KC584432	KC584690	–	Woudenberg et al. (2013)
A. sonchi	Sonchi	CBS 119675	KC584220	KC584142	KC584433	KC584691	–	Woudenberg et al. (2013)
A. steviae	Porri	CBS 117362T	KJ718252	KJ718079	KJ718427	KJ718598	–	Woudenberg et al. (2014)
A. subcucurbitae	Ulocladioides	CBS 121491T	KC584249	EU855803	KC584489	KC584749	–	Woudenberg et al. (2013)
A. tagetica	Porri	CBS 479.81	KC584221	KC584143	KC584434	KC584692	–	Woudenberg et al. (2013)
A. tellustris	Embellisia	CBS 538.83T	FJ357316	AY562419	KC584465	KC584724	JQ671794	Woudenberg et al., 2013, Deng et al., 2018
A. terricola	Ulocladioides	CBS 202.67T	FJ266490	KC584177	KC584490	KC584750	–	Woudenberg et al. (2013)
A. tillandsiae	Porri	CBS 116116T	KJ718260	KJ718087	KJ718435	KJ718606	–	Woudenberg et al. (2014)
A. thalictrigena		CBS 121712T	EU040211	KC584144	KC584436	KC584694	–	Woudenberg et al. (2013)
A. thunbergiae	Porri	CBS 116331T	KJ718257	KJ718084	KJ718432	KJ718603	–	Woudenberg et al. (2014)
A. tomato	Alternaria	CBS 103.30	KP124445	KP124294	KP124915	KP125224	–	Woudenberg et al. (2015)
A. triglochinicola	Eureka	CBS 119676T	KC584222	KC584145	KC584437	KC584695	–	Woudenberg et al. (2013)
A. triticimaculans	Infectoriae	CBS 578.94T	JQ693657	JQ646280	LR134183	–	JQ671806	Poursafar et al. (2018), present study
A. triticina	Infectoriae	CBS 763.84T	AY278834	JQ646281	LR134186	FJ214942	JQ671808	Andersen et al., 2009, Poursafar et al., 2018, Present study
A. tropica	Porri	CBS 631.93T	KJ718261	KJ718088	KJ718436	KJ718607	–	Woudenberg et al. (2014)
A. tumida	Embellisioides	CBS 539.83T	FJ266481	FJ266493	KC584466	KC584725	–	Woudenberg et al. (2013)
A. quercicola	Infectoriae	CBS 141466T	KX228295	KX228362	LR134188	LR134259	LR134115	Crous et al. (2013), present study
A. vaccariae	Gypsophilae	CBS 116533	KC584223	KC584146	KC584438	KC584696	–	Woudenberg et al. (2013)
A. vaccariicola	Gypsophilae	CBS 118714T	KC584224	KC584147	KC584439	KC584697	–	Woudenberg et al. (2013)
A. venezuelensis	Porri	CBS 116121T	KJ718263	KJ718090	KJ718438	KJ718609	–	Woudenberg et al. (2014)
A. ventricosa	Infectoriae	CBS 121546T	JQ693649	JQ646290	LR134134	KY352501	JQ671818	Poursafar et al. (2018), Fotedar et al. (unpubl. data), present study
A. viburni	Infectoriae	CBS 119407T	JQ693647	JQ646288	LR134166	LR134200	JQ671816	Poursafar et al. (2018), present study
A. zinniae	Porri	CBS 117223	KJ718270	KJ718096	KJ718445	KJ718616	–	Woudenberg et al. (2014)

¹CBS: Culture collection of the Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CNU: Culture Collection Center of the Chungnam National University; DAOM: Canadian Collection of Fungal Cultures, Ottawa, Canada; EGS: Personal collection of Dr. E.G. Simmons; FMR: Facultat de Medicina, Universitat Rovira i Virgili, Reus, Spain; IRAN: Fungal Culture Collections of the Iranian Research Institute of Plant Protection; KUMCC, Culture collection of Kunming Institute of Botany, Kunming, China; LEP: Mycological Herbarium of All-Russian Institute of Plant Protection, Saint Petersburg, Russia; MFLU and MFLUCC: Herbarium and culture collection of Mae Fah Luang University, Chiang Rai, Thailand, respectively; PPRI: ARC-Plant Protection Research Institute, Roodeplaat, South Africa. ^T indicates ex-type strains.

²ITS: internal transcribed spacers and intervening 5.8S nrDNA; gapdh: partial glyceraldehyde-3-phosphate dehydrogenase gene; rpb2: partial DNA-directed RNA polymerase II second largest subunit gene; tef1: partial translation elongation factor 1-alpha gene; ATPase: partial plasma membrane ATPase gene.