Table 6.
DNA barcodes of accepted Neosetophoma spp.
| Species | Isolates1 | GenBank accession numbers2 |
References | |||
|---|---|---|---|---|---|---|
| ITS | rpb2 | tef1 | tub2 | |||
| Neosetophoma aseptata | CBS 145363T | MK539953 | MK540084 | – | – | Present study |
| Nph. clematidis | MFLUCC 13-0734T | KP744450 | – | – | – | Liu et al. (2015) |
| Nph. garethjonesii | MFLUCC 14-0528T | KY496758 | – | KY514402a | – | Tibpromma et al. (2017) |
| Nph. guiyangensis | GZCC 18-0111T | MH018134 | – | – | – | Hyde et al. (2018) |
| Nph. iranianum | IBRC-M 30176T | MF684861 | – | – | – | Karunarathna et al. (2017) |
| Nph. italica | MFLUCC 13-0388T | KP711356 | – | – | – | Liu et al. (2015) |
| Nph. lunariae | CBS 141409T | KX306763 | – | – | – | Hernández-Restrepo et al. (2016a) |
| Nph. phragmitis | CBS 145364T | MK539954 | MK540085 | MK540148b | – | Present study |
| Nph. poaceicola | MFLUCC 16-0886T | KY568986 | – | – | – | Thambugala et al. (2017) |
| Nph. rosae | MFLUCC 15-1073T | MG828925 | – | MG829218a | – | Wanasinghe et al. (2018) |
| Nph. rosarum | MFLUCC 17-0308T | MG828927 | – | – | – | Wanasinghe et al. (2018) |
| Nph. rosigena | MFLUCC 17-0768T | MG828928 | – | – | – | Wanasinghe et al. (2018) |
| Nph. samarorum | CBS 138.96ET | KF251160 | KF252168 | KF253119b | KF252655 | Quaedvlieg et al. (2013) |
| Nph. sambuci | CBS 145365T | MK539955 | MK540086 | MK540149b | – | Present study |
| Nph. shoemakeri | MFLUCC 17-0780 | MG844346 | – | MG844352a | – | Hyde et al. (2018) |
| Nph. xingrensis | GZCC 18-0110T | MH018135 | – | – | – | Hyde et al. (2018) |
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; GZCC: Guizhou Academy of Agricultural Sciences Culture Collection, Guiyang, China; IBRC: Herbarium of the Plant bank, Iranian Biological Resource Center, Karaj, Iran; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria, Thailand. T and ET indicate ex-type and ex-epitype strains, respectively.
ITS: internal transcribed spacers and intervening 5.8S nrDNA; rpb2: partial DNA-directed RNA polymerase II second largest subunit gene; tef1: partial translation elongation factor 1-alpha gene; tub2: partial β-tubulin gene. a and b in tef1 column indicate the primers used for sequencing: a: EF1-983F / EF1-2218R; b: EF1-728F / EF-2.