Table 2. Full-length nucleotide sequences of citrus tatter leaf virus isolates and capilloviruses used in phylogenetic and sequence identity analysis.
| Isolate | Host | Host Scientific Name | Geographic Origin |
Isolation Year |
GenBank Accession Number |
GenBank Deposit Year |
Cluster | Clade |
|---|---|---|---|---|---|---|---|---|
| AGSV-YTG | Apple | Malus domestica | China | 2012 | KJ579253 | 2014 | I | A |
| ASGV-HH | Pear | Pyrus pyrifolia cv. 'Huanghua' | China | 2009 | JN701424 | 2012 | ||
| ASGV-CHN | Apple | M. domestica | China | 2011 | JQ308181 | 2013 | ||
| ASG-241KP | Apple | M. domestica | Japan | 1992 | D14995 | 2008 | ||
| ASGV-P-209 | Apple | M. domestica | Japan | 1993 | NC001749 | 2018 | ||
| ASGV-Nagami | Kumquat | Fortunella margarita (Lour.) Swing. | Japan | 2016 | LC184612 | 2017 | ||
| CTLV-ASGV-2-HJY | Citrus- Huang Jin Mi You | C. maxima (Burm.) Merrill | China | 2016 | MH144343 | 2018 | ||
| CTLV-MTH | Citrus- Ponkan Mandarin | C. reticulata Blanco | China | 2013 | KC588948 | 2013 | ||
| CTLV-IPPN122 | Citrus- Sa Tou Satsuma | C. unshiu (Macf.) Marc. | China | 1992 | MH108986 | 2018 | ||
| CTLV-L | Lily | Lilium longiflorum | Japan | 1993 | D16681 | 2008 | II | |
| ASGV-Li-23 | Apple | M. domestica | Japan | 1997 | AB004063 | 2000 | ||
| ASGV-FKSS2 | Citrus | C. junos Sieb. ex Tanaka | Japan | 2014 | LC143387 | 2016 | ||
| ASGV-N297 | Citrus- Satsuma | C. unshiu (Macf.) Marc. | Japan | 1987 | LC184610 | 2017 | ||
| ASGV-AC | Apple | M. domestica | Germany | 2009 | JX080201 | 2012 | III | B |
| ASGVp12 | Apple | M. domestica cv. Red Chief | India | 2011 | HE978837 | 2015 | ||
| ASGV-Ac | Actinidia | Actinidia sp. | China | 2015 | KX988001 | 2017 | ||
| ASGV-Matsuco | Citrus | C. tamurana | Japan | 2014 | LC084659 | 2015 | ||
| CTLV-Ponkan8 | Citrus- Ponkan Mandarin | C. reticulata Blanco | Taiwan | 2012 | KY706358 | 2018 | ||
| CTLV-Pk | Citrus- Ponkan Mandarin | C. reticulata Blanco | Taiwan | 2012 | JX416228 | 2012 | ||
| CTLV-TL113 | Citrus- Citron | C. medica L. | China | 2014 | MH108983 | 2018 | ||
| CTLV-TL114 | Citrus- Citron | C. medica L. | China | 2014 | MH108984 | 2018 | ||
| CTLV-TL112 | Citrus- Citron | C. medica L. | China | 2014 | MH108982 | 2018 | ||
| CTLV-LCd-NA-1 | Citrus- Sweet Orange | C. sinensis L. Osb. | Taiwan | 2004 | FJ355920 | 2008 | ||
| CTLV-HJY | Citrus- Huang Jin Mi You | C. maxima (Burm.) Merrill | China | 2016 | MH144341 | 2018 | ||
| CTLV-Kumquat1 | Kumquat | F. margarita (Lour.) Swing. | Taiwan | 2004 | AY646511 | 2004 | ||
| CTLV-Shatang Orange | Citrus- Shatang Mandarin | C. reticulata Blanco | China | 2011 | JQ765412 | 2012 | ||
| CTLV-XHC | Citrus- Sweet Orange | C. sinensis L. Osb. | China | 2013 | KC588947 | 2013 | ||
| CTLV-ML | Citrus- Meyer Lemon | C. limon (L.) Burm.f. hyb. | FL, USA | 2008 | EU553489 | 2010 | IV | |
| CTLV-TL111 | Citrus- Meyer Lemon | C. limon (L.) Burm.f. hyb. | FL, USA | 1964 | MH108981 | 2018 | ||
| CTLV-TL110 | Citrus- Little Sweetie Satsuma | C. unshiu (Macf.) Marc. | CA, USA | 1989 | MH108980 | 2018 | ||
| CTLV-TL103 | Citrus- Hirado Buntan Pummelo | C. maxima (Burm.) Merrill | Japan | 1983 | MH108978 | 2018 | ||
| CTLV-TL101 | Citrus- Meyer Lemon | C. limon (L.) Burm.f. hyb. | CA, USA | 1969 | MH108976 | 2018 | ||
| CTLV-TL100 | Citrus- Meyer Lemon | C. limon (L.) Burm.f. hyb. | TX, USA | 1958 | MH108975 | 2018 | ||
| CTLV-TL102 | Citrus- Meyer Lemon | C. limon (L.) Burm.f. hyb. | CA, USA | 1958 | MH108977 | 2018 | ||
| CTLV-TL104 | Citrus- Kobeni Mikan Tangor | C. reticulata x C. sinensis | China | 1987 | MH108979 | 2018 | ||
| CTLV-TL115 | Citrus- Dekopon Tangor | C. reticulata x C. sinensis | Japan | 2007 | MH108985 | 2018 | ||
| ASGV-Kiyomi | Citrus | C. unshiu x C. sinensis | Japan | 2016 | LC184611 | 2017 | ||
| CTLV-ASGV-1-HJY | Citrus- Huang Jin Mi You | C. maxima (Burm.) Merrill | China | 2016 | MH144342 | 2018 | ||
| PBNLSV | Pear | P. pyrifolia | S. Korea | 2004 | AY596172 | 2004 | Outgroup | |
| ASGV-kfp | Pear | P. pyrifolia | China | 2014 | KR106996 | 2015 | ||
| AGSV-HT | Apple | M. spp. Crabapple | China | 2015 | KU947036 | 2017 | ||
| CVA | Cherry | Prunus avium L. cv. Sam | Germany | 1994 | NC003689 | 2018 | ||
Abbreviations: CTLV: citrus tatter leaf virus; ASGV: apple stem grooving virus; PBNLSV: pear black necrotic leaf spot virus; CVA: cherry virus A; S. Korea: South Korea