Table 1. Characterization of the loops of the G domain.
(Motif-)Loop | Sequence | Key residuesa | Flexibility | ||
---|---|---|---|---|---|
clusters | populationb | RMSDc | |||
G1-P | 44–52 | K48, K51 | 23 | 89.6% | 7.7 Å |
G2-SW1 | 58–77 | S73, T75 | 259 | 40.5% | 15.5 Å |
G3-SW2 | 98–110 | E99 | 175 | 50.6% | 14.5 Å |
L1 | 149–172 | 115 | 42.4% | 9.5 Å | |
G4-L2 | 181–198 | D184 | 194 | 37.1% | 13.4 Å |
GC | 235–261 | R240, R244, D255 | 675 | 26.4% | 22.0 Å |
a Residues which are important for GTP binding, hydrolysis or hGBP1 dimerization.
b Percentage of the structures which are cumulatively represented by the first three clusters.
c The largest RMSD found between two loop conformations.