Table 1.
List of the hybrid putative RDases with TMHs in their N-terminus. Sequence information and the predicted functions by the automated annotation for each sequence are included in Supporting Information.
| Organism | Length (aa) | TMH | C-terminus orientation | GenBank accession number | Sample source used for (meta)genome sequencing | Reference |
|---|---|---|---|---|---|---|
| Deltaproteobacteria bacterium | 482 | 3 | Cytoplasmic | - a | Marine sediment from Aarhus Bay | (Jochum et al. 2018) |
| Dethiosulfatarculus sandiegensis | 487 | 3 | Exoplasmic | WP_08 246 4279 | Pure deltaproteobacterial culture isolated from a methanogenic long-chain paraffins degrading consortium obtained from marine sediments | (Davidova et al. 2016) |
| Deltaproteobacterium NaphS2 | 478 | 3 | Cytoplasmic | EFK11122 | Pure deltaproteobacterial culture isolated from naphthalene-degrading enrichment obtained from marine sediments | (Galushko et al. 1999; Didonato Jr et al. 2010) |
| Marinifilaceae bacterium strain SPP2 | 459 | 3 | Exoplasmic | WP_09 642 9615 | Pure Marinilabiliales culture isolated from the Antarctic marine sediment | (Watanabe, Kojima and Fukui 2018) |
| Marinifilum fragile | 456 | 3 | Exoplasmic | WP_05 471 5848 | Pure Marinilabiliales culture isolated from tidal flat sediment in Korea | (Na et al. 2009) |
| Marinifilum breve | 457 | 3 | Cytoplasmic | WP_110 360 576 | Pure Marinilabiliales culture isolated from the Yongle Blue Hole in the South China Sea | (Fu et al. 2018) |
| Marinifilum flexuosum | 454 | 3 | Cytoplasmic | WP_120 240 634 | Pure Marinilabiliales culture isolated from coastal Mediterranean Sea water | (Ruvira et al. 2013) |
| Ancylomarina sp. M1P | 450 | 3 | Cytoplasmic | WP_125 029 802 | Pure Marinilabiliales culture isolated from Black Sea water | Unpublished |
| Labilibaculum filiforme | 454 | 3 | Exoplasmic | WP_101 260 201 | Pure Marinilabiliales culture isolated from the subsurface sediments of the Baltic Sea | (Vandieken et al. 2018) |
| Labilibacter marinus | 444 | 3 | Cytoplasmic | WP_06 663 2432 | Pure Marinilabiliales culture isolated from marine sediment at Weihai in China | (Liu et al. 2015; Lu et al. 2017) |
| Salinivirga cyanobacteriivorans | 453 | 3 | Cytoplasmic | WP_05 795 4221 | Pure Marinilabiliales culture isolated from the suboxic zone of a hypersaline cyanobacterial mat | (Ben Hania et al. 2017) |
| Caldithrix abyssi | 444 | 3 | Cytoplasmic | WP_0 069 30498 | Pure Calditrichales culture isolated from Mid-Atlantic Ridge hydrothermal vent | (Miroshnichenko et al. 2003; Kublanov et al. 2017) |
| Deltaproteobacteria bacterium | 491 | 3 | Exoplasmic | RLB29679 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Deltaproteobacteria bacterium | 451 | 3 | Exoplasmic | RLB34449 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Deltaproteobacteria bacterium | 455 | 3 | Exoplasmic | RLC06278 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Deltaproteobacteria bacterium | 456 | 3 | Exoplasmic | RLB93792 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Deltaproteobacteria bacterium | 455 | 3 | Exoplasmic | RLC22838 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Deltaproteobacteria bacterium | 414 | 3 | Cytoplasmic | RLC21098 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Deltaproteobacteria bacterium | 497 | 3 | Cytoplasmic | RLB22016 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Deltaproteobacteria bacterium | 359 | 3 | Cytoplasmic | RLC02598 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Desulfobacteraceae bacterium 4572_187 | 478 | 3 | Exoplasmic | OQY12990 | Hydrothermal sediment | (Dombrowski et al. 2017) |
| Desulfobacteraceae bacterium 4572_89 | 454 | 3 | Exoplasmic | OQY53460 | Hydrothermal sediments | (Dombrowski et al. 2017) |
| Bacteroidetes bacterium | 457 | 3 | Exoplasmic | RLD45891 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Bacteroidetes bacterium | 447 | 3 | Exoplasmic | RLD65038 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Bacteroidetes bacterium | 457 | 3 | Exoplasmic | RLD32997 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Bacteroidetes bacterium | 402 | 1 | Exoplasmic | RLD55593 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Bacteroidetes bacterium | 469 | 3 | Cytoplasmic | RLD42118 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Bacteroidetes bacterium 4484_249 | 446 | 2 | Cytoplasmic | OQX80664 | Hydrothermal sediments | (Dombrowski et al. 2017) |
| Bacteroidetes bacterium | 476 | 4 | Cytoplasmic | RLD38167 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Bacteroidetes bacterium | 454 | 3 | Cytoplasmic | RLD75418 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Acidobacteria bacterium | 450 | 3 | Cytoplasmic | RLE20106 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Chloroflexi bacterium | 453 | 3 | Exoplasmic | RLD03862 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Chloroflexi bacterium | 457 | 3 | Exoplasmic | RLD00869 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Chloroflexi bacterium | 453 | 3 | Cytoplasmic | RLD11393 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Bacterium | 453 | 3 | Cytoplasmic | RKZ14043 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Bacterium | 448 | 3 | Cytoplasmic | RKZ19839 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Candidate division KSB1 bacterium | 457 | 3 | Exoplasmic | RKY76530 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Candidate division KSB1 bacterium 4572_119 | 417 | 1 | Exoplasmic | OQX94610 | Hydrothermal sediments | (Dombrowski et al. 2017) |
| Candidate division KSB1 bacterium 4484_87 | 458 | 3 | Exoplasmic | OQX85480 | Hydrothermal sediments | (Dombrowski et al. 2017) |
| Candidate division Zixibacteria bacterium | 501 | 3 | Exoplasmic | RKX26209 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Candidate division Zixibacteria bacterium | 461 | 3 | Cytoplasmic | RKX27199 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Candidatus Aminicenantes bacterium 4484_214 | 511 | 3 | Cytoplasmic | OQX52307 | Hydrothermal sediments | (Dombrowski et al. 2017) |
| Candidatus Aminicenantes bacterium | 469 | 3 | Cytoplasmic | RLE02852 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Candidatus Omnitrophica bacterium | 389 | 1 | Exoplasmic | RKY41132 | Hydrothermal sediments | (Dombrowski, Teske and Baker 2018) |
| Deltaproteobacteria bacterium | 463 | 3 | Exoplasmic | PLX41189 | Perchlorate-reducing communities | (Barnum et al. 2018) |
| Salinivirgaceae bacterium | 497 | 4 | Exoplasmic | PLX17815 | Perchlorate-reducing communities | (Barnum et al. 2018) |
| Marinilabiliales bacterium | 456 | 3 | Exoplasmic | PLW95329 | Perchlorate-reducing communities | (Barnum et al. 2018) |
| Marinilabiliales bacterium | 446 | 3 | Exoplasmic | PLW99613 | Perchlorate-reducing communities | (Barnum et al. 2018) |
| Marinilabiliales bacterium | 455 | 3 | Cytoplasmic | PLW92978 | Perchlorate-reducing communities | (Barnum et al. 2018) |
| Marinilabiliales bacterium | 454 | 3 | Cytoplasmic | PLX09622 | Perchlorate-reducing communities | (Barnum et al. 2018) |
| Marinilabiliales bacterium | 458 | 3 | Cytoplasmic | PLX19442 | Perchlorate-reducing communities | (Barnum et al. 2018) |
| Marinilabiliales bacterium | 452 | 3 | Cytoplasmic | PLX02242 | Perchlorate-reducing communities | (Barnum et al. 2018) |
| Bacteroidetes bacterium GWE2_32_14 | 432 | 2 | Exoplasmic | OFX85901 | Aquifers | (Anantharaman et al. 2016) |
| Bacteroidetes bacterium GWE2_40_15 | 462 | 3 | Exoplasmic | OFX81662 | Aquifers | (Anantharaman et al. 2016) |
| Candidatus Fischerbacteria bacterium RBG_13_37_8 | 447 | 3 | Cytoplasmic | OGF65237 | Aquifers | (Anantharaman et al. 2016) |
| Desulfobacterales bacterium RIFOXYA12_FULL_46_15 | 456 | 3 | Cytoplasmic | OGR28476 | Aquifers | (Anantharaman et al. 2016) |
| Desulfobacteraceae bacterium | 476 | 3 | Exoplasmic | RPI80002 | Wetlands | (Martins et al. 2018) |
| Deltaproteobacteria bacterium | 468 | 3 | Exoplasmic | RPJ06807 | Wetlands | (Martins et al. 2018) |
| Bacteroidales bacterium | 454 | 3 | Exoplasmic | RPH31952 | Wetlands | (Martins et al. 2018) |
| Bacterium SM23_31 | 446 | 3 | Cytoplasmic | KPK88368 | Estuary sediments | (Baker et al. 2015) |
| Candidate division Zixibacteria bacterium SM23_73_2 | 441 | 3 | Cytoplasmic | KPL04245 | Estuary sediments | (Baker et al. 2015) |
| Latescibacteria bacterium DG_63 | 453 | 3 | Cytoplasmic | KPJ61247 | Estuary sediments | (Baker et al. 2015) |
| Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15 | 542 | 3 | Exoplasmic | PKN64391 | Deep terrestrial subsurface sediments | (Hernsdorf et al. 2017) |
| Candidate division Zixibacteria bacterium HGW-Zixibacteria-1 | 459 | 3 | Exoplasmic | PKK82132 | Deep terrestrial subsurface sediments | (Hernsdorf et al. 2017) |
| Desulfobacteraceae bacterium | 489 | 3 | Cytoplasmic | RJR39500 | Deep terrestrial subsurface fluids | (Momper et al. 2017) |
| Marinimicrobia bacterium 46_43 | 453 | 3 | Exoplasmic | KUK91590 | Oil Reservoirs | (Hu et al. 2016) |
| Candidatus Korarchaeota archaeon | 452 | 3 | Exoplasmic | PMB78244 | Hot springs | (Wilkins et al. 2018) |
| Desulfobacterales bacterium S5133MH16 | 488 | 3 | Exoplasmic | OEU64681 | Marine sediments | Unpublished |
| Candidate division KSB1 bacterium | 432 | 3 | Cytoplasmic | RQW00415 | - b | Unpublished |
a
Not available; sequence information provided in Supporting Information
b
Not available