Online-only Table 1.
Long repeats (repeat unit > 50 bp) in Scaffold 1 of the C. sinensis var. assamica mt genome.
| Repeat Length | Type* | Start of Copy 2 | Start of Copy 1 |
|---|---|---|---|
| 5119 | F | 207173 | 443366 |
| 2191 | F | 389017 | 391244 |
| 1963 | F | 210330 | 212292 |
| 1962 | F | 212292 | 446523 |
| 1930 | F | 383226 | 385188 |
| 1650 | F | 205522 | 207173 |
| 1650 | F | 205522 | 443366 |
| 1469 | F | 538290 | 539780 |
| 814 | F | 496567 | 498047 |
| 705 | F | 619432 | 621461 |
| 665 | F | 497382 | 498862 |
| 255 | P | 151984 | 200526 |
| 228 | P | 448476 | 544136 |
| 204 | F | 277002 | 363807 |
| 131 | P | 73675 | 482324 |
| 125 | F | 301855 | 468834 |
| 104 | F | 297204 | 623713 |
| 88 | F | 228824 | 559689 |
| 87 | F | 594334 | 641398 |
| 84 | F | 530415 | 646532 |
| 82 | P | 224027 | 395044 |
| 82 | F | 509347 | 623862 |
| 81 | P | 152363 | 200041 |
| 80 | F | 304361 | 306020 |
| 78 | P | 299987 | 587603 |
| 74 | F | 165777 | 570981 |
| 70 | F | 165878 | 571083 |
| 69 | F | 123050 | 384677 |
| 69 | F | 123050 | 386639 |
| 67 | F | 18495 | 27472 |
| 66 | F | 299782 | 537227 |
| 66 | P | 364849 | 599005 |
| 66 | F | 684228 | 684285 |
| 65 | P | 508609 | 683320 |
| 64 | F | 542385 | 560020 |
| 63 | F | 605770 | 619261 |
| 62 | P | 70098 | 424512 |
| 62 | F | 151516 | 524252 |
| 62 | P | 156839 | 486845 |
| 61 | F | 123120 | 384747 |
| 61 | F | 123120 | 386709 |
| 61 | P | 142673 | 486240 |
| 60 | F | 302012 | 395122 |
| 59 | P | 265260 | 472040 |
| 58 | F | 285626 | 402303 |
| 57 | P | 152478 | 199950 |
| 57 | F | 276881 | 363698 |
| 56 | F | 402376 | 658389 |
| 55 | P | 41703 | 667438 |
| 55 | F | 258578 | 486959 |
*P indicates palindromic repeats; F indicates forward repeats. Overlapped repeats have been manually removed while calculating total length.