Online-only Table 3.
Predicted RNA-editing sites in the C. sinensis var. assamica cp genome. (*The cutoff score (C-value) was set to 0.8).
| No. | Gene | Nucleotide Pos | AA Pos | Effect | Score* |
|---|---|---|---|---|---|
| 1 | accD | 64 | 22 | CGG (R) => TGG (W) | 1 |
| 2 | accD | 1469 | 490 | CCT (P) => CTT (L) | 1 |
| 3 | atpA | 791 | 264 | CCA (P) => CTA (L) | 1 |
| 4 | atpA | 914 | 305 | TCA (S) => TTA (L) | 1 |
| 5 | atpF | 92 | 31 | CCA (P) => CTA (L) | 0.86 |
| 6 | atpI | 134 | 45 | GCT (A) => GTT (V) | 1 |
| 7 | matK | 445 | 149 | CAC (H) => TAC (Y) | 1 |
| 8 | matK | 467 | 156 | TCG (S) => TTG (L) | 1 |
| 9 | matK | 631 | 211 | CAT (H) => TAT (Y) | 1 |
| 10 | matK | 1234 | 412 | CAT (H) => TAT (Y) | 1 |
| 11 | ndhA | 341 | 114 | TCA (S) => TTA (L) | 1 |
| 12 | ndhA | 566 | 189 | TCA (S) => TTA (L) | 1 |
| 13 | ndhA | 1028 | 343 | TCT (S) => TTT (F) | 1 |
| 14 | ndhA | 1073 | 358 | TCT (S) => TTT (F) | 1 |
| 15 | ndhB | 149 | 50 | TCA (S) => TTA (L) | 1 |
| 16 | ndhB | 467 | 156 | CCA (P) => CTA (L) | 1 |
| 17 | ndhB | 586 | 196 | CAT (H) => TAT (Y) | 1 |
| 18 | ndhB | 611 | 204 | TCA (S) => TTA (L) | 0.8 |
| 19 | ndhB | 737 | 246 | CCA (P) => CTA (L) | 1 |
| 20 | ndhB | 746 | 249 | TCT (S) => TTT (F) | 1 |
| 21 | ndhB | 830 | 277 | TCA (S) => TTA (L) | 1 |
| 22 | ndhB | 1481 | 494 | CCA (P) => CTA (L) | 1 |
| 23 | ndhD | 20 | 7 | ACG (T) => ATG (M) | 1 |
| 24 | ndhD | 401 | 134 | TCA (S) => TTA (L) | 1 |
| 25 | ndhD | 692 | 231 | TCA (S) => TTA (L) | 1 |
| 26 | ndhD | 896 | 299 | TCA (S) => TTA (L) | 1 |
| 27 | ndhD | 905 | 302 | CCT (P) => CTT (L) | 1 |
| 28 | ndhD | 1328 | 443 | TCA (S) => TTA (L) | 0.8 |
| 29 | ndhF | 205 | 69 | CAT (H) => TAT (Y) | 0.8 |
| 30 | ndhF | 290 | 97 | TCA (S) => TTA (L) | 1 |
| 31 | ndhG | 166 | 56 | CAT (H) => TAT (Y) | 0.8 |
| 32 | ndhG | 314 | 105 | ACA (T) => ATA (I) | 0.8 |
| 33 | petB | 641 | 214 | CCA (P) => CTA (L) | 1 |
| 34 | psaI | 80 | 27 | TCT (S) => TTT (F) | 0.86 |
| 35 | psbE | 214 | 72 | CCT (P) => TCT (S) | 1 |
| 36 | psbF | 77 | 26 | TCT (S) => TTT (F) | 1 |
| 37 | rpoA | 368 | 123 | TCG (S) => TTG (L) | 1 |
| 38 | rpoB | 338 | 113 | TCT (S) => TTT (F) | 1 |
| 39 | rpoB | 473 | 158 | TCA (S) => TTA (L) | 0.86 |
| 40 | rpoB | 551 | 184 | TCA (S) => TTA (L) | 1 |
| 41 | rpoB | 566 | 189 | TCG (S) => TTG (L) | 1 |
| 42 | rpoB | 973 | 325 | CTT (L) => TTT (F) | 0.86 |
| 43 | rpoB | 2000 | 667 | TCT (S) => TTT (F) | 1 |
| 44 | rpoB | 2336 | 779 | ACA (T) => ATA (I) | 1 |
| 45 | rpoC1 | 41 | 14 | TCA (S) => TTA (L) | 1 |
| 46 | rpoC1 | 1556 | 519 | TCG (S) => TTG (L) | 1 |
| 47 | rpoC2 | 1505 | 502 | ACG (T) => ATG (M) | 0.86 |
| 48 | rpoC2 | 2290 | 764 | CGG (R) => TGG (W) | 1 |
| 49 | rpoC2 | 2726 | 909 | ACT (T) => ATT (I) | 1 |
| 50 | rpoC2 | 3728 | 1243 | TCA (S) => TTA (L) | 0.86 |
| 51 | rps2 | 248 | 83 | TCA (S) => TTA (L) | 1 |
| 52 | rps8 | 182 | 61 | TCA (S) => TTA (L) | 0.86 |
| 53 | rps14 | 80 | 27 | TCA (S) => TTA (L) | 1 |
| 54 | rps14 | 149 | 50 | CCA (P) => CTA (L) | 1 |