Online-only Table 1.
Names, types, descriptions, and locations of primary data and additional files included in this data set.
| File Name | Description | Type | Location | URL |
|---|---|---|---|---|
| Top Level ADNI1 Project Page26 | Synapse Portal page for AMP-AD ADNI1 project | Portal | Synapse | http://dx.doi.org/10.7303/syn5592519 |
| Top Level ADNI2-GO Page27 | Synapse Portal page for AMP-AD ADNI2-GO project | Portal | Synapse | http://dx.doi.org/10.7303/syn9705278 |
| Primary Metabolomics Files | ||||
| ADMCBA.csv28 | ADNI1 Bile Acid Data, concentrations | Data | LONI | http://dx.doi.org/10.7303/syn12036817.1 |
| ADMCBA_DICT.csv29 | ADNI1 Bile Acids Data dictionary | Data Dict | LONI | http://dx.doi.org/10.7303/syn12036821.1 |
| ADNI_ADMC_Bile_Acids_Method_Description_20160121.pdf30 | ADNI1 Bile Acid Methods Description | Methods | LONI | http://dx.doi.org/10.7303/syn12036820.1 |
| ADNI_ADMCM2OVEBA.csv31 | ADNI2-GO Bile Acid Data, concentrations | Data | LONI | http://dx.doi.org/10.7303/syn9779093.1 |
| ADNI_ADMCM2OVEBA_DICT.csv32 | ADNI2-GO Bile Acids Data dictionary | Data Dict | LONI | http://dx.doi.org/10.7303/syn9779094.1 |
| ADMC_ADNIGO2_Bile_Acids_Method_Description.pdf33 | ADNI2-GO Bile Acid Methods Description | Methods | Synapse | http://dx.doi.org/10.7303/syn9779078.1 |
| Supplemental Metabolomics Files | ||||
| ADNI Bile Acids _LEVEL0_to_LEVEL1.R etc.34 | Data processing R scripts | Scripts | Synapse | http://dx.doi.org/10.7303/syn12036815 |
| 4226_Bile_Acids_NIST_and_QC_Data.xlsx35 | ADNI1 NIST and QC values | Supp data | Synapse | http://dx.doi.org/10.7303/syn9779088.1 |
| ADNI1 BA LOD values.csv36 | ADNI1 LOD values | Supp data | Synapse | http://dx.doi.org/10.7303/syn12046012.1 |
| 4543_Bile_Acids_QC_and_NIST_Data.xlsx37 | ADNI2-GO NIST and QC | Supp data | Synapse | http://dx.doi.org/10.7303/syn9779088.1 |
| BILEACIDSLODvalues.csv38 | ADNI2-GO LOD values | Supp data | Synapse | http://dx.doi.org/10.7303/syn9779079.1 |
| BileAcidRatios_revised_2017_12_07.csv39 | ADNI1 Bile Acid Ratios | Supp data | Synapse | http://dx.doi.org/10.7303/syn12046208.1 |
| Fasting Status-ADNI1.txt40 | ADNI Fasting Status | Supp data | Synapse | http://dx.doi.org/10.7303/syn12046023.1 |
| Clinical and Medication files | ||||
| ADNI_All_Clinical_Data_16May2016.csv44 | Clinical variables (a subset of ADNI’s complete list) snapshot from May, 2016 | Data | LONI | http://dx.doi.org/10.7303/syn7477271.1 |
| RECCMEDS.csv45 | Original medication data- all cohorts, all timepoints. NOT versioned. | Data | LONI | http://dx.doi.org/10.7303/syn7829508.1 |
| Medication mapping pipeline files43 | Scripts and config files for medication concept mapping and classification | Scripts | Synapse | http://dx.doi.org/10.7303/syn7477310 |
| ADMCADNI1SCPATIENTDRUGCLASSES.csv41 | Results file mapping participants to classes of drugs taken at baseline for ADNI1 | Supp data | LONI | http://dx.doi.org/10.7303/syn7440367.1 |
| Patient drug classes for ADNIGO242 | Results file mapping participants to classes of drugs taken at baseline for ADNIGO2 | Supp data | LONI | http://dx.doi.org/10.7303/syn12179110.1 |