Table 5.

Oligonucleotide probes used in fluorescent in Situ hybridization

Target	Probe	Sequence (5′ to 3′)	References
Enterobacteriaceae	Enter1432	CTTTTGCAACCCACT	Sghir et al., (2000) [79]
Clostridium leptum subgroup	Clept1240	GTTTTRTCAACGGCAGTC
Clostridium coccoides —Eubacterium rectale cluster	Erec482	GCTTCTTAGTCARGTACCG	Franks et al., (1998) [19]
Aeromonas spp.	Aer66	CTA CTT TCC CGC TGC CGC	Huber et al., (2004) [32]
Bacillus spp.	Bmy843	CTT CAG CAC TCA GGT TCG	Salzman et al., (2002)
Carnobacterium spp.	CAR193	AGC CAC CTT TCC TTC AAG	Huber et al., (2004) [32]
Enterococcus spp.	Enfm93	CCG GAA AAA GAG GAG TGG C	Waar et al., (2005)
Lactobacillus group	Lab722	YCA CCG CTA CAC ATG RAG TTC CAC T	Sghir et al., (1998)