Table 1.
Overview Of 11 Modules And Grey Module (Including Genes That Can’t Be Assigned To Any Modules) Constructed By WGCNA
| Module Name | Size (n) | MiRNA (n) | Co.DEG (n) | DEG-hub (n) | Correlation With Important Clinic Parameters |
|---|---|---|---|---|---|
| Turquoise | 820 | 3 | 197 | 50 | Grade: r=0.23 p=0.041 |
| Grey | 702 | 41 | 87 | 1 | |
| Blue | 585 | 32 | 76 | 14 | |
| Brown | 521 | 1 | 159 | 23 | Grade: r=−0.34 p=0.0019 |
| T stage: r=−0.23 p=0.016 | |||||
| Yellow | 296 | 5 | 115 | 0 | |
| Green | 286 | 4 | 70 | 13 | T stage: r=0.27 p=0.016 |
| Red | 217 | 3 | 36 | 5 | N stage: r=0.32 p=0.0035 |
| Black | 121 | 3 | 26 | 5 | N stage: r=0.28 p=0.01 |
| Clinical stage: r=0.28 p=0.039 | |||||
| Pink | 83 | 2 | 31 | 7 | |
| Magenta | 82 | 0 | 16 | 2 | |
| Purple | 74 | 0 | 6 | 0 | Grade: r=0.25 p=0.027 |
| T stage: r=0.23 p=0.038 | |||||
| Greenyellow | 54 | 51 | 0 | 0 |
Notes: DEG, the differentially expressed genes (DEGs) through the above analysis; hub, the 10% of genes with the highest connectivity was defined as hub genes in each modules; Hub-DEG, the intersection of DEGs and hub.