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. Author manuscript; available in PMC: 2020 Oct 9.
Published in final edited form as: Cell Host Microbe. 2019 Sep 17;26(4):551–563.e6. doi: 10.1016/j.chom.2019.08.017

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit polyclonal anti-Legionella Thermo Fisher Scientific Cat#PA1–7227; RRID: AB_559903
Mouse polyclonal anti-Legionella Arasaki and Roy, 2010 N/A
Rabbit polyclonal anti-Nogo A+B Abcam Cat#ab47085; RRID: AB_881718
Mouse monoclonal anti-Cytochrome C BD Cat#556432; RRID: AB_396416
Mouse monoclonal anti-GM130 BD Cat#610822; RRID: AB_398141
Mouse monoclonal anti-LAMP1 (D4O1S) Cell Signaling Technology Cat#15665; RRID: AB_2798750
Rabbit monoclonal anti-FLAG (D6W5B) Cell Signaling Technology Cat#14793; RRID: AB_2572291
Mouse monoclonal anti-FLAG M2 Sigma-Aldrich Cat#F1804; RRID: AB_262044
Mouse monoclonal anti-RABIF (D-12) Santa Cruz Biotechnology Cat#sc-390759; RRID: AB_2756826
Rabbit monoclonal anti-Rab10 (D36C4) Cell Signaling Technology Cat#8127; RRID: AB_10828219
Rabbit polyclonal anti-Rab1A (C-19) Santa Cruz Biotechnology Cat#sc-311; RRID: AB_632290
Mouse monoclonal anti-GAPDH (6C5) Thermo Fisher Scientific Cat#AM4300; RRID: AB_2536381
Bacterial and Virus Strains
Legionella pneumophila serogroup 1 strain Lp01 Berger and Isberg, 2003 N/A
Lp01 ΔdotA Berger and Isberg, 2003 N/A
Lp01 mCherry Laboratory of Craig Roy N/A
Lp01 ΔSidC-SdcA + vector Laboratory of Craig Roy N/A
Lp01 ΔSidC-SdcA + pSidC Laboratory of Craig Roy N/A
Lp01 ΔSidC-SdcA + pSdcA Laboratory of Craig Roy N/A
Legionella pneumophila serogroup 1 strain Lp02 rpsL hsdR thyA- Berger and Isberg, 2003 N/A
Lp02 ΔdotA Berger and Isberg, 2003 N/A
Lp02 Δ2,3,4,6,7 O’Connor et al., 2011 N/A
Lp02 Δ2,3,6,7 O’Connor et al., 2011 N/A
Lp02 Δ2,3,6 O’Connor et al., 2011 N/A
Lp02 Δ7 O’Connor et al., 2011 N/A
Biological Samples
Chemicals, Peptides, and Recombinant Proteins
Rifampicin Sigma R3501
pHrodo Red, succinimidyl ester Thermo Fisher Scientific P36600
pHrodo Red E. coli BioParticles Conjugate for Phagocytosis Thermo Fisher Scientific P35361
pHrodo Red S. aureus BioParticles Conjugate for Phagocytosis Thermo Fisher Scientific A10010
Zymosan A from Saccharomyces cerevisiae Sigma Z4250
1 μm amino magnetic polystyrene beads Spherotech AM-10–10
Cytochalasin D Thermo Fisher Scientific PHZ1063
Isopropyl β-D-thiogalactoside Sigma I6758
Hoechst 33342 Thermo Fisher Scientific H3570
Brefeldin A LC Laboratories B-8500
Nocodazole Sigma M1404
GFP-Trap_A Chromotek Gta-20
Janelia Fluor 646 HaloTag ligand Laboratory of Luke Lavis N/A
Critical Commercial Assays
Deposited Data
Raw sequencing data from screens This paper SRA: SRP202048
Experimental Models: Cell Lines
Human: U937 cells ATCC CRL-1593.2
Human: HeLa cells ATCC CCL-2
Human: HEK293 cells ATCC CRL-1573
Mouse: Raw 264.7 cells ATCC TIB-71
Experimental Models: Organisms/Strains
Oligonucleotides
See Table S5 for sgRNAs used This paper N/A
Recombinant DNA
LentiCas9-Blast Sanjana et al., 2014 Addgene Plasmid #52962
pHR-UCOE-EF1A-Cas9-BFP Jonathan Weissman N/A
pMCB306 (pSico-pU6-sgRNA EF1A-Puro-T2A-GFP) Deans et al., 2016 Addgene Plasmid #89360
pMCB320 (pSico-pU6-sgRNA EF1A-Puro-T2A-mCherry) Morgens et al., 2017 Addgene Plasmid #89359
pSico-EF1A-Puro-T2A-C1ORF43-GFP This paper N/A
pSico-EF1A-G418-T2A-C1ORF43–3xFLAG This paper N/A
pSico-EF1A-G418-T2A-C1ORF431–41-3xFLAG This paper N/A
pSico-EF1A-Puro-T2A-GFP-RABIF This paper N/A
pSico-EF1A-Puro-T2A-GFP-RAB10 This paper N/A
pSico-EF1A-Puro-T2A-GFP-RAB10 Q68L This paper N/A
pSico-EF1A-Puro-T2A-GFP-RAB10 T23N This paper N/A
pSico-EF1A-Puro-T2A-GFP-RAB10 K154A This paper N/A
pCDNA4/T0-FLAG-SdcA Horenkamp et al., 2014 N/A
pCDNA4/T0-FLAG-SdcA ΔC Horenkamp et al., 2014 N/A
Software and Algorithms
casTLE Morgens et al., 2017 https://bitbucket.org/dmorgens/castle
GOrilla Eden et al., 2009 http://cbl-gorilla.cs.technion.ac.il/
SAINT Choi et al., 2011 https://reprint-apms.org/
MaxQuant Cox and Mann, 2008 https://maxquant.org/
MSstats Choi et al., 2014 https://bioconductor.org/packages/release/bioc/html/MSstats.html
Fiji Schindelin et al., 2012 https://fiji.sc/
Prism Graphpad https://www.graphpad.com/
Cytoscape Shannon et al., 2003 https://cytoscape.org/
PyMOL, Version 2.0 Schrödinger https://pymol.org/2/
Other