Antibodies |
Rabbit polyclonal anti-Legionella |
Thermo Fisher Scientific |
Cat#PA1–7227; RRID: AB_559903 |
Mouse polyclonal anti-Legionella |
Arasaki and Roy, 2010 |
N/A |
Rabbit polyclonal anti-Nogo A+B |
Abcam |
Cat#ab47085; RRID: AB_881718 |
Mouse monoclonal anti-Cytochrome C |
BD |
Cat#556432; RRID: AB_396416 |
Mouse monoclonal anti-GM130 |
BD |
Cat#610822; RRID: AB_398141 |
Mouse monoclonal anti-LAMP1 (D4O1S) |
Cell Signaling Technology |
Cat#15665; RRID: AB_2798750 |
Rabbit monoclonal anti-FLAG (D6W5B) |
Cell Signaling Technology |
Cat#14793; RRID: AB_2572291 |
Mouse monoclonal anti-FLAG M2 |
Sigma-Aldrich |
Cat#F1804; RRID: AB_262044 |
Mouse monoclonal anti-RABIF (D-12) |
Santa Cruz Biotechnology |
Cat#sc-390759; RRID: AB_2756826 |
Rabbit monoclonal anti-Rab10 (D36C4) |
Cell Signaling Technology |
Cat#8127; RRID: AB_10828219 |
Rabbit polyclonal anti-Rab1A (C-19) |
Santa Cruz Biotechnology |
Cat#sc-311; RRID: AB_632290 |
Mouse monoclonal anti-GAPDH (6C5) |
Thermo Fisher Scientific |
Cat#AM4300; RRID: AB_2536381 |
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Bacterial and Virus Strains |
Legionella pneumophila serogroup 1 strain Lp01 |
Berger and Isberg, 2003 |
N/A |
Lp01 ΔdotA
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Berger and Isberg, 2003 |
N/A |
Lp01 mCherry |
Laboratory of Craig Roy |
N/A |
Lp01 ΔSidC-SdcA + vector |
Laboratory of Craig Roy |
N/A |
Lp01 ΔSidC-SdcA + pSidC |
Laboratory of Craig Roy |
N/A |
Lp01 ΔSidC-SdcA + pSdcA |
Laboratory of Craig Roy |
N/A |
Legionella pneumophila serogroup 1 strain Lp02 rpsL hsdR thyA-
|
Berger and Isberg, 2003 |
N/A |
Lp02 ΔdotA
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Berger and Isberg, 2003 |
N/A |
Lp02 Δ2,3,4,6,7 |
O’Connor et al., 2011 |
N/A |
Lp02 Δ2,3,6,7 |
O’Connor et al., 2011 |
N/A |
Lp02 Δ2,3,6 |
O’Connor et al., 2011 |
N/A |
Lp02 Δ7 |
O’Connor et al., 2011 |
N/A |
Biological Samples |
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Chemicals, Peptides, and Recombinant Proteins |
Rifampicin |
Sigma |
R3501 |
pHrodo Red, succinimidyl ester |
Thermo Fisher Scientific |
P36600 |
pHrodo Red E. coli BioParticles Conjugate for Phagocytosis |
Thermo Fisher Scientific |
P35361 |
pHrodo Red S. aureus BioParticles Conjugate for Phagocytosis |
Thermo Fisher Scientific |
A10010 |
Zymosan A from Saccharomyces cerevisiae
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Sigma |
Z4250 |
1 μm amino magnetic polystyrene beads |
Spherotech |
AM-10–10 |
Cytochalasin D |
Thermo Fisher Scientific |
PHZ1063 |
Isopropyl β-D-thiogalactoside |
Sigma |
I6758 |
Hoechst 33342 |
Thermo Fisher Scientific |
H3570 |
Brefeldin A |
LC Laboratories |
B-8500 |
Nocodazole |
Sigma |
M1404 |
GFP-Trap_A |
Chromotek |
Gta-20 |
Janelia Fluor 646 HaloTag ligand |
Laboratory of Luke Lavis |
N/A |
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Critical Commercial Assays |
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Deposited Data |
Raw sequencing data from screens |
This paper |
SRA: SRP202048 |
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Experimental Models: Cell Lines |
Human: U937 cells |
ATCC |
CRL-1593.2 |
Human: HeLa cells |
ATCC |
CCL-2 |
Human: HEK293 cells |
ATCC |
CRL-1573 |
Mouse: Raw 264.7 cells |
ATCC |
TIB-71 |
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Experimental Models: Organisms/Strains |
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Oligonucleotides |
See Table S5 for sgRNAs used |
This paper |
N/A |
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Recombinant DNA |
LentiCas9-Blast |
Sanjana et al., 2014 |
Addgene Plasmid #52962 |
pHR-UCOE-EF1A-Cas9-BFP |
Jonathan Weissman |
N/A |
pMCB306 (pSico-pU6-sgRNA EF1A-Puro-T2A-GFP) |
Deans et al., 2016 |
Addgene Plasmid #89360 |
pMCB320 (pSico-pU6-sgRNA EF1A-Puro-T2A-mCherry) |
Morgens et al., 2017 |
Addgene Plasmid #89359 |
pSico-EF1A-Puro-T2A-C1ORF43-GFP |
This paper |
N/A |
pSico-EF1A-G418-T2A-C1ORF43–3xFLAG |
This paper |
N/A |
pSico-EF1A-G418-T2A-C1ORF431–41-3xFLAG |
This paper |
N/A |
pSico-EF1A-Puro-T2A-GFP-RABIF |
This paper |
N/A |
pSico-EF1A-Puro-T2A-GFP-RAB10 |
This paper |
N/A |
pSico-EF1A-Puro-T2A-GFP-RAB10 Q68L |
This paper |
N/A |
pSico-EF1A-Puro-T2A-GFP-RAB10 T23N |
This paper |
N/A |
pSico-EF1A-Puro-T2A-GFP-RAB10 K154A |
This paper |
N/A |
pCDNA4/T0-FLAG-SdcA |
Horenkamp et al., 2014 |
N/A |
pCDNA4/T0-FLAG-SdcA ΔC |
Horenkamp et al., 2014 |
N/A |
Software and Algorithms |
casTLE |
Morgens et al., 2017 |
https://bitbucket.org/dmorgens/castle |
GOrilla |
Eden et al., 2009 |
http://cbl-gorilla.cs.technion.ac.il/ |
SAINT |
Choi et al., 2011 |
https://reprint-apms.org/ |
MaxQuant |
Cox and Mann, 2008 |
https://maxquant.org/ |
MSstats |
Choi et al., 2014 |
https://bioconductor.org/packages/release/bioc/html/MSstats.html |
Fiji |
Schindelin et al., 2012 |
https://fiji.sc/ |
Prism |
Graphpad |
https://www.graphpad.com/ |
Cytoscape |
Shannon et al., 2003 |
https://cytoscape.org/ |
PyMOL, Version 2.0 |
Schrödinger |
https://pymol.org/2/ |
Other |
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