Table 1. Summary of Computed Unbinding Times for Etoposide from Two Topoisomerase Isoformsa.
TopoIIα |
TopoIIβ |
|||
---|---|---|---|---|
Site1 | Site2 | Site1 | Site2 | |
Avg. unbinding time [tr± σe (ns)] | 75.4 ± 7.6 | 98.8 ± 8.6 | 34.0 ± 2.7 | 64.6 ± 7.0 |
Avg. unbinding time over both sites [tr± σe (ns)] | 87.1 ± 8.1 | 87.1 ± 8.1 | 49.3 ± 4.8 | 49.3 ± 4.8 |
Total smulation time (μs) | 2.6 | 3.3 | 1.25 | 2.1 |
Computational unbinding (dissociation) times averaged over replicas are reported in nanoseconds. The unbinding times are shown together with the standard error of mean over a sample size of 32 simulations (of several tens of ns) for both Site1 and Site2 in both TopoII isoforms.