Table 2. Germline truncating mutation found in this study.
Patient ID | Gene | Reference sequence | dbSNP Accession Number | Nucleotide change | Amino acid change | Type of mutation | dbSNP | ClinVar | PolyPhen2 | MutationTaster | FATHMM | Our interpretation for pathogenicity |
---|---|---|---|---|---|---|---|---|---|---|---|---|
19 | BRCA2 | NM_000059 | Rs397507568 | c.10150 C>T | p. Arg3384Ter | Nonsense | VUS | Conflicting | — | Disease causing | — | VUS |
31 | BRCA1 | NM_007294 | rs80356923 | c.3640 G>T | p. Glu1214Ter | Nonsense | Other | Pathogenic | — | Disease causing | Cancer | Pathogenic |
37 | BRCA2 | NM_000059 | rs80359520 | c.5574_5577 delAATT | p. Ile1859Lys fs*3 | Frameshift | Pathogenic | Pathogenic | — | Disease causing | — | Pathogenic |
57 | BRCA2 | NM_000059 | rs80359314 | c.1887_1888 insA | p. Thr630Asn fs*6 | Frameshift | Pathogenic | Pathogenic | — | Disease causing | — | Pathogenic |