Table 1.
RNA-Seq read mapping summary.
| Sample | Total Reads | Total Mapped Reads | Unique Mapped Reads | Reads Mapped in Paired | Detected Gene Number | Detected SNP Number | Detected InDel Number |
|---|---|---|---|---|---|---|---|
| CON 1 | 152,017,088 | 94.17% | 75.18% | 92.02% | 9793 | 50,655 | 8142 |
| CON 2 | 151,919,042 | 93.78% | 74.16% | 91.80% | 9485 | 46,504 | 7442 |
| CON 3 | 152,842,644 | 96.66% | 78.92% | 94.02% | 9777 | 50,140 | 8047 |
| LF 1 | 151,975,658 | 96.84% | 77.27% | 94.59% | 9890 | 51,318 | 8190 |
| LF 2 | 152,415,436 | 95.30% | 73.01% | 92.95% | 9171 | 43,676 | 7003 |
| LF 3 | 151,898,670 | 91.47% | 65.73% | 88.37% | 9219 | 42,587 | 6739 |