Table 4.
QTL results from the IM procedure for combined FA BLUP values for the combined harvest seasons.
| Trait | LG | -log10 p | % var. expl | Range (Mbps) | Peak marker | Start | Stop | T1C1 Tukey | T1C2 Tukey | T2C1 Tukey | T2C2 Tukey | T1C1 | T1C2 | T2C1 | T2C2 | T1 | T2 | C1 | C2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C16:0 | 1 | 8.8 | 8.9 | 1.6 | 32,918,760 | 32,918,760 | 34,560,615 | a | a | b | c | 28.3 | 28.3 | 28.9 | 29.4 | 28.3 | 29.1 | 28.6 | 28.9 |
| C16:0 | 4 | 27.6 | 23.5 | 0.4 | 992,801 | 651,315 | 1,006,787 | a | a | b | b | 28.1 | 28.1 | 29.3 | 29.6 | 28.1 | 29.4 | 28.7 | 28.8 |
| C16:0 | 7 | 6.0 | 6.2 | 5.7 | 7,581,095 | 4,489,509 | 10,151,992 | ab | b | a | a | 28.8 | 29.3 | 28.6 | 28.3 | 29.0 | 28.4 | 28.7 | 28.8 |
| C16:0 | 8 | 7.1 | 7.3 | 0.3 | 1,169,653 | 869,653 | 1,469,653 | ab | c | a | bc | 28.7 | 29.2 | 28.2 | 28.9 | 28.9 | 28.5 | 28.4 | 29.1 |
| C16:0 | 9 | 5.8 | 5.9 | 0.4 | 6,156,866 | 6,064,842 | 6,463,616 | a | a | a | b | 28.5 | 28.5 | 28.6 | 29.3 | 28.5 | 29.0 | 28.6 | 28.9 |
| C16:0 | 10 | 5.2 | 5.4 | 1.8 | 22,559,001 | 22,428,849 | 24,223,155 | ab | a | bc | c | 28.6 | 28.3 | 28.9 | 29.2 | 28.4 | 29.0 | 28.7 | 28.7 |
| C18:0 | 1 | 10.0 | 10.0 | 2.9 | 10,168,848 | 8,353,112 | 11,276,895 | b | b | b | a | 31.9 | 31.6 | 31.5 | 30.6 | 31.7 | 31.1 | 31.7 | 31.0 |
| C18:0 | 4 | 16.3 | 15.4 | 0.3 | 311,794 | 11,794 | 611,794 | b | b | a | a | 31.8 | 32.0 | 30.9 | 30.7 | 31.9 | 30.8 | 31.4 | 31.4 |
| C18:0 | 7 | 7.3 | 7.4 | 3.3 | 4,402,504 | 4,369,124 | 7,678,456 | ab | a | bc | c | 31.1 | 30.9 | 31.6 | 32.0 | 31.0 | 31.8 | 31.3 | 31.4 |
| C18:0 | 8 | 9.3 | 9.4 | 0.4 | 2,743,235 | 2,743,235 | 3,163,772 | a | a | b | a | 31.3 | 31.0 | 32.0 | 31.3 | 31.1 | 31.7 | 31.7 | 31.1 |
| C18:0 | 9 | 3.8 | 3.9 | 0.3 | 33,349,545 | 33,049,545 | 33,649,545 | b | a | b | a | 31.6 | 31.1 | 31.6 | 31.0 | 31.4 | 31.4 | 31.6 | 31.1 |
| C18:0 | 10 | 4.7 | 4.9 | 21.1 | 21,842,572 | 3,163,433 | 24,223,155 | b | b | a | a | 31.8 | 31.9 | 31.1 | 31.0 | 31.8 | 31.1 | 31.5 | 31.5 |
| C18:1 | 1 | 4.0 | 4.1 | 0.3 | 34,641,359 | 34,341,359 | 34,941,359 | b | ab | a | a | 35.0 | 34.8 | 34.6 | 34.7 | 34.9 | 34.6 | 34.8 | 34.7 |
| C18:1 | 3 | 4.5 | 4.7 | 0.3 | 30,259,960 | 30,259,960 | 30,606,185 | b | b | ab | a | 35.0 | 34.9 | 34.8 | 34.5 | 34.9 | 34.6 | 34.9 | 34.7 |
| C18:1 | 4 | 10.0 | 10.0 | 1.4 | 16,507,100 | 16,210,309 | 17,636,309 | b | b | a | a | 35.0 | 35.0 | 34.6 | 34.4 | 35.0 | 34.5 | 34.8 | 34.7 |
| C18:1 | 6 | 6.2 | 6.4 | 3.0 | 13,900,060 | 13,545,822 | 16,515,632 | bc | a | c | ab | 34.9 | 34.5 | 35.1 | 34.6 | 34.7 | 34.8 | 35.0 | 34.6 |
| C18:1 | 8 | 5.3 | 5.5 | 6.0 | 15,120,872 | 9,610,444 | 15,631,835 | b | b | a | ab | 34.9 | 35.0 | 34.5 | 34.7 | 34.9 | 34.6 | 34.7 | 34.9 |
| C18:2 | 1 | 7.6 | 7.7 | 1.0 | 12,340,943 | 12,200,052 | 13,162,985 | a | bc | b | c | 3.6 | 3.9 | 3.8 | 4.0 | 3.8 | 3.9 | 3.7 | 4.0 |
| C18:2 | 2 | 5.5 | 5.7 | 0.3 | 41,100,466 | 40,846,923 | 41,141,331 | bc | c | ab | a | 3.9 | 4.0 | 3.8 | 3.7 | 3.9 | 3.7 | 3.8 | 3.8 |
| C18:2 | 4 | 5.6 | 5.7 | 3.6 | 21,656,111 | 21,656,111 | 25,267,317 | a | a | b | a | 3.8 | 3.7 | 4.0 | 3.8 | 3.8 | 3.9 | 3.9 | 3.7 |
| C18:2 | 5 | 5.9 | 6.1 | 8.2 | 28,110,818 | 24,696,466 | 32,855,680 | a | b | a | a | 3.8 | 4.1 | 3.7 | 3.8 | 3.9 | 3.8 | 3.8 | 4.0 |
| C18:2 | 9 | 7.2 | 7.4 | 0.3 | 37,832,439 | 37,532,439 | 38,132,439 | b | a | a | a | 4.0 | 3.8 | 3.8 | 3.7 | 3.9 | 3.7 | 3.9 | 3.7 |
| C20:0 | 2 | 5.7 | 5.9 | 3.5 | 7,662,068 | 5,894,024 | 9,348,946 | c | ab | bc | a | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 |
| C20:0 | 4 | 18.8 | 17.3 | 6.6 | 19,637,361 | 19,637,361 | 26,233,319 | a | a | a | a | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 |
| C20:0 | 6 | 11.7 | 11.5 | 0.2 | 23,105,784 | 23,105,784 | 23,272,507 | c | ab | b | a | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 |
| C20:0 | 8 | 18.4 | 17.0 | 1.2 | 3,274,675 | 2,113,570 | 3,274,675 | b | a | b | a | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 |
| C20:0 | 9 | 31.8 | 26.1 | 0.5 | 8,949,637 | 8,689,672 | 9,216,013 | c | b | b | a | 0.9 | 0.9 | 0.9 | 0.8 | 0.9 | 0.9 | 0.9 | 0.9 |
| % Fat Content | 2 | 9.8 | 9.8 | 1.2 | 7,032,556 | 6,637,416 | 7,831,310 | c | bc | b | a | 56.7 | 56.3 | 56.1 | 55.5 | 56.5 | 55.8 | 56.5 | 55.9 |
| % Fat Content | 3 | 4.6 | 4.8 | 12.7 | 24,615,758 | 12,502,277 | 25,250,690 | ab | c | a | bc | 55.7 | 56.6 | 55.6 | 56.3 | 56.2 | 56.0 | 55.7 | 56.5 |
| % Fat Content | 4 | 4.1 | 4.2 | 6.6 | 19,637,361 | 19,637,361 | 26,233,319 | a | a | a | a | 56.1 | 56.6 | 56.3 | 56.0 | 56.3 | 56.1 | 56.2 | 56.3 |
| % Fat Content | 5 | 6.2 | 6.4 | 9.8 | 8,884,977 | 8,884,977 | 18,719,781 | b | a | b | a | 56.5 | 55.8 | 56.6 | 55.9 | 56.2 | 56.2 | 56.6 | 55.8 |
| % Fat Content | 6 | 7.2 | 7.4 | 1.4 | 3,766,082 | 3,512,802 | 4,938,058 | ab | c | a | bc | 56.0 | 56.8 | 55.7 | 56.4 | 56.3 | 56.1 | 55.8 | 56.6 |
| % Fat Content | 9 | 6.6 | 6.7 | 0.6 | 9,216,013 | 8,689,672 | 9,263,083 | b | a | ab | a | 56.7 | 55.9 | 56.3 | 55.8 | 56.3 | 56.1 | 56.5 | 55.8 |
The -log10 p is the statistical magnitude of the significance of the peak maker associated to the trait. Range is the size in mega base pairs of the QTL region one-log10 p value away from the peak marker. Start and Stop indicate the locations for the range. Tukey’s multiple comparisons of haplotype differences are reported for each haplotype, where different letters refer to statistically different means at α = 0.05. The means for the genotypes belonging to the haplotype groups T1C1, T1C2, T2C1, and T2C2 are reported in addition to single haplotype means (T1, T2, C1, and C2). The coordinates are based on the “Matina1-6” genome.