Table 3.
Average nucleotide diversity () and Tajima's D (T D) with 95% confidence intervals in brackets estimated from Pool‐seq data mapped to the S. trutta and S. salar assemblies, respectively
| Reference | Pool | n (windows) | n (SNPs) | (10–3) | T D |
|---|---|---|---|---|---|
| S. trutta | Introduced I | 16,346 | 52,473 | 1.86 (1.81–1.92) | −0.065 (−0.081 to −0.048) |
| Introduced II | 15,564 | 45,783 | 1.65 (1.60–1.70) | −0.180 (−0.200 to −0.163) | |
| Natural A | 17,250 | 55,707 | 1.80 (1.74–1.84) | −0.160 (−0.174 to −0.141) | |
| Natural B | 16,212 | 60,188 | 1.95 (1.90–2.01) | −0.202 (−0.220 to −0.184) | |
| S. salar | Introduced I | 125,934 | 204,956 | 1.07 (1.06–1.08) | 0.103 (0.098–0.108) |
| Introduced II | 127,524 | 200,006 | 0.97 (0.96–0.98) | −0.038 (−0.043 to −0.033) | |
| Natural A | 155,326 | 289,247 | 1.14 (1.13–1.15) | −0.004 (−0.009 to 0.001) | |
| Natural B | 120,600 | 231,984 | 1.09 (1.08–1.10) | −0.030 (−0.036 to −0.024) |
Average values were obtained from estimates of nonoverlapping, 500‐bp windows with >90% coverage after subsampling and quality and depth filtering. n (windows): total number of windows; n (SNPs): total number of SNPs.