Table 1.
Cryo-EM structure determination and model statistics.
Data collection | |
Magnification | 130 kx |
Pixel size (Å) | 1.058 |
Defocus Range (µm) | −0.85 to −1.65 |
Voltage (kV) | 300 |
Exposure time (s per frame) | 0.4 |
Number of frames | 50 |
Total dose (e/Å) | 86 |
Reconstitution | |
Box size (pixels) | 256 |
Inter-box distance (Å) | 50.227 |
Asymmetrical units | 11 |
Micrographs | 153 |
Manually picked filaments | 957 |
Initial extracted segments | 9300 |
Segments after 2D classification | 9270 |
Resolution after 3D auto-refine (Å) | 3.1 |
Final overall resolution (Å) | 2.8 |
Estimated map sharpening B-factor (Å2) | −42.33 |
Helical rise (Å) | 4.83 |
Helical twist (°) | 65.45 |
Atomic model | |
GenBank Accession number | WP_068455577 |
R.m.s. deviations | |
Bond lengths (Å) | 0.006 |
Bond angles (°) | 1.148 |
Validation | |
Map CC (local) | 0.734 |
MolProbity clashscore | 2.31 |
Overall score | 1.05 |
Rotamer outliers (%) | 0.00 |
Ramachandran plot | |
Favored (%) | 97.81 |
Allowed (%) | 2.19 |
Outliers (%) | 0.00 |