Table 2.
Sample name | Sequence type | Raw tag count | Low quality tag count | Invalid adapter tag count | PolyA tag count | Short valid length tag | Clean tag count | Q20 of clean tag (%) | Percentage of clean tag (%) |
---|---|---|---|---|---|---|---|---|---|
A1 | SE50 | 33,802,816 | 798,386 | 1,928,938 | 968 | 6,926,317 | 2,414,8207 | 99.2 | 71.44 |
A2 | SE50 | 53,333,333 | 1,461,394 | 8,263,994 | 2188 | 19,097,315 | 24,508,442 | 99.3 | 45.95 |
A3 | SE50 | 33,333,333 | 759,589 | 3,743,393 | 882 | 4,940,744 | 23,888,725 | 99.4 | 71.67 |
B1 | SE50 | 44,444,444 | 1,158,469 | 5,440,175 | 938 | 13,658,455 | 24,186,407 | 99.4 | 54.42 |
B2 | SE50 | 30,168,691 | 698,531 | 2,603,094 | 2321 | 1,930,997 | 24,933,748 | 99.1 | 82.65 |
B3 | SE50 | 29,268,292 | 726,845 | 1,906,737 | 405 | 2,532,111 | 24,102,194 | 99.5 | 82.35 |
Note: Percentage (%) = clean tag count/raw tag count.