Table 4. Summary of alignment statistics (raw counts).
| Sample: | CDS | misc_RNA | rRNA | tRNA | sRNA | tmRNA |
|---|---|---|---|---|---|---|
| HM01 | UR | 12345933 | 907900 | 1504 | 43435 | 1680592 | 905367 |
| HM01 | UTI | 2989889 | 124744 | 143 | 19133 | 126985 | 91056 |
| HM03 | UR | 16274560 | 999727 | 44 | 76181 | 1985885 | 1090263 |
| HM03 | UTI | 6461781 | 197433 | 24 | 69006 | 179905 | 109081 |
| HM06 | UR | 17985174 | 904287 | 43 | 76160 | 1439268 | 738927 |
| HM06 | UTI | 3623181 | 123428 | 23 | 17015 | 72873 | 40864 |
| HM07 | UR | 15776986 | 1262236 | 177 | 39363 | 2165537 | 1005391 |
| HM07 | UTI | 1546060 | 86761 | 30 | 12681 | 43708 | 16065 |
| HM14 | UR | 16393471 | 1148443 | 86 | 32625 | 2146180 | 1110769 |
| HM14 | UTI | 10441062 | 286490 | 50 | 59823 | 291189 | 194198 |
| HM17 | UR | 14986237 | 830647 | 48 | 24865 | 1358261 | 642452 |
| HM17 | UTI | 1370047 | 76227 | 15 | 13494 | 50273 | 29443 |
| HM43 | UR | 13960276 | 916836 | 21 | 37450 | 1653607 | 867656 |
| HM43 | UTI | 6541810 | 225003 | 29 | 30200 | 321597 | 194030 |
| HM54 | UR | 15863933 | 873414 | 1662 | 25326 | 1517844 | 858505 |
| HM54 | UTI | 4873058 | 192289 | 353 | 32932 | 97321 | 61939 |
| HM56 | UR | 13349576 | 701313 | 78 | 15697 | 1222601 | 609922 |
| HM56 | UTI | 11860835 | 386845 | 52 | 86723 | 295607 | 175048 |
| HM57 | UR | 14617905 | 919256 | 157 | 15069 | 1567276 | 732845 |
| HM57 | UTI | 662515 | 38910 | 13 | 6057 | 24340 | 13929 |
| HM60 | UR | 11949731 | 647306 | 62 | 13601 | 1169464 | 633959 |
| HM60 | UTI | 540215 | 28718 | 11 | 5361 | 14062 | 7958 |
| HM66 | UR | 12409693 | 825583 | 51 | 19323 | 1595303 | 884439 |
| HM66 | UTI | 52232 | 2161 | 0 | 366 | 1137 | 534 |
| HM68 | UR | 12187024 | 442312 | 22 | 22226 | 938831 | 571220 |
| HM68 | UTI | 1755457 | 115276 | 16 | 19970 | 110052 | 65627 |
| HM86 | UR | 11110009 | 597368 | 551 | 23424 | 1021292 | 517105 |
| HM86 | UTI | 5023803 | 179823 | 46 | 49276 | 197828 | 103919 |