TABLE 1.
Gene | SNP | Genotype or haplotype | No. of cases (vaccine:placebo) | HRa | 95% CI | P valueb | Interaction P valuec | Interaction q valuec |
---|---|---|---|---|---|---|---|---|
FCGR3B | FCGR3B-5'utr44-T/A (rs34322334) | TT | 10:16 | 0.66 | 0.29, 1.5 | 0.317 | 0.033 | 0.178 |
TA/AAd | 14:5 | 2.84 | 0.98, 8.18 | 0.054 | ||||
FCGR3B-5'utr99-C/G (rs61803026) | CC | 9:14 | 0.68 | 0.29, 1.6 | 0.375 | 0.032 | 0.178 | |
CG/GGd | 18:7 | 2.6 | 1.06, 6.37 | 0.036 | ||||
FCGR3B-5'utr222-G/A (rs34085961) | GG | 10:16 | 0.65 | 0.29, 1.49 | 0.308 | 0.023 | 0.178 | |
GA/AAd | 15:5 | 3.07 | 1.07, 8.75 | 0.036 | ||||
FCGR2C | FCGR2C-exon06-441-C/T (rs138747765) | CC | 17:20 | 0.86 | 0.44, 1.7 | 0.667 | 0.034 | 0.178 |
CT/TTd | 9:1 | 9.79 | 1.17, 81.78 | 0.035 | ||||
FCGR2C-intron06-590-G/A (rs78603008) | GG | 17:20 | 0.86 | 0.44, 1.7 | 0.667 | 0.034 | 0.182 | |
GA/AAd | 9:1 | 9.79 | 1.17, 81.78 | 0.035 | ||||
FCGR2C-intron15-403-C/T (rs373013207) | CC | 15:18 | 0.88 | 0.43, 1.78 | 0.719 | 0.045 | 0.182 | |
CT/TTd | 12:3 | 3.92 | 1.08, 14.16 | 0.037 | ||||
FCGR2C-intron15-433-G/A (rs201984478) | GG | 13:17 | 0.82 | 0.39, 1.73 | 0.601 | 0.042 | 0.182 | |
GA/AAd | 14:4 | 3.33 | 1.08, 10.29 | 0.036 | ||||
CT/TTd | 11:4 | 2.14 | 0.6, 7.55 | 0.239 | ||||
FCGR3B | FCGR3B-AGA | |||||||
− | 11:16 | 0.73 | 0.33, 1.62 | 0.439 | 0.047 | |||
+ | 14:5 | 2.78 | 0.97, 7.94 | 0.057 | ||||
FCGR2C | FCGR2C-TATA | |||||||
− | 17:20 | 0.86 | 0.44, 1.7 | 0.667 | 0.034 | |||
+ | 9:1 | 9.79 | 1.17, 81.78 | 0.035 |
Vaccine/placebo hazard ratio of HIV-1 acquisition in HVTN 505 for individuals with the given genotype at the given SNP.
P value of testing for HR = 1 for individuals with the given genotype at the given SNP.
Interaction P value of testing for a difference in HR between the two indicated genotype groups. Boldface indicates P ≤ 0.05 and q ≤ 0.2.
The genotypes containing at least one minor allele.