Table 2.

Summary of Copy Number Variants

Gene	Description	Gene Coordinates	Variant Type	Frequency, % (no./No.)
				Ethiopia	Thailand	Indonesia	Malaysia
PVP01_0504500	28S ribosomal RNA	5: 194 522-1 949 297	Amplification	100 (24/24)	92 (96/104)	95 (80/84)	89 (41/46)
PVP01_0523500	Plasmodium exported protein	5: 951 202–952 041	Deletion	63 (15/24)	0 (0/104)	0 (0/84)	0 (0/46)
PVP01_0524900, PVP01_0525000	Plasmodium exported proteins	5: 1 010 759-1 011 581 5: 1 013 733-1 014 550	Deletion	4 (1/24)	0 (0/104)	0 (0/84)	0 (0/46)
PVP01_0623800	Duffy binding protein 1	6: 982 015–985 813	Amplification	79 (19/24)	30 (31/104)	6 (5/84)	4 (2/46)
PVP01_1470400	Plasmodium exported protein	14: 3 009 446-3 010 524	Amplification	33 (8/24)	49 (51/104)	46 (39/84)	89 (41/46)

Twenty-two samples with an excess of copy number variants (≥18) were excluded from analysis.