Table 3.
Differentially expressed transcripts of phytohormone genes detected in the comparisons of transgenic leaves from NT:T vs. non-transgenic leaves from NT:NT, non-transgenic leaves from NT:T vs. non-transgenic leaves from NT:NT, and transgenic roots from NT:T vs. non-transgenic roots form NT:NT
| Query id | Subject id | Log2 (NT:T transgenic leaves/NT:NT leaves) | Log2(NT:T non- transgenic leaves/NT:NT leaves) | Log2(NT:T root/ NT:NT root) | Annotation by Trinotate | Hormone | Gene_name |
|---|---|---|---|---|---|---|---|
| AT2G29090.1 | c80869_g4_i1 | #N/A | −1.79 | −0.68 | ABAH1_ARATH | ABA | CYP707A2 |
| AT2G29090.1 | c84314_g2_i1 | #N/A | −1.63 | #N/A | ABAH1_ARATH | ABA | CYP707A2 |
| AT2G29090.1 | c88313_g2_i1 | −1.37 | −2.58 | #N/A | ABAH1_ARATH | ABA | CYP707A2 |
| AT1G52400.1 | c80508_g1_i1 | #N/A | 1.46 | #N/A | BGL34_ORYSJ | ABA | BGL1, ATBG1, BGLU18 |
| AT1G52340.1 | c84480_g1_i1 | −1.83 | −1.14 | −1.86 | C7A29_PANGI | ABA | SRE1, ISI4, ABA2 |
| AT3G19270.1 | c80869_g4_i2 | #N/A | −1.95 | −1.13 | C7A52_PANGI | ABA | CYP707A4 |
| AT3G19270.1 | c83078_g3_i3 | #N/A | −2.19 | #N/A | C7A52_PANGI | ABA | CYP707A4 |
| AT5G45340.1 | c88211_g1_i2 | #N/A | −1.61 | −1.85 | C7A52_PANGI | ABA | CYP707A3 |
| AT1G30100.1 | c99178_g3_i1 | #N/A | −1.11 | −0.77 | NCED1_PHAVU | ABA | NCED5, ATNCED5 |
| AT1G52340.1 | c84480_g1_i2 | #N/A | −1.71 | −2.84 | SILD_FORIN | ABA | SRE1, ISI4, ABA2 |
| AT4G31500.1 | c93443_g1_i2 | #N/A | −1.54 | −0.66 | C71E1_SORBI | Auxin | CYP735A1 |
| AT4G31500.1 | c97022_g2_i1 | #N/A | −1.72 | #N/A | C71E1_SORBI | Auxin | CYP701A3, ATKO1, GA3 |
| AT2G30770.1 | c91695_g3_i1 | #N/A | −1.65 | −1.62 | C78A7_ARATH | Auxin | CYP701A3, ATKO1, GA3 |
| AT2G30770.1 | c91695_g3_i3 | #N/A | −1.74 | #N/A | C78A7_ARATH | Auxin | CYP701A3, ATKO1, GA3 |
| AT2G30770.1 | c99171_g4_i6 | −0.87 | −1.09 | #N/A | C78A7_ARATH | Auxin | CYP701A3, ATKO1, GA3 |
| AT4G32540.1 | c83588_g1_i1 | 1.26 | 1.27 | #N/A | YUC_ARATH | Auxin | YUC, YUC1 |
| AT1G17060.1 | c93255_g4_i1 | 1.15 | 0.81 | 1.8 | C7A29_PANGI | BR | CYP735A1 |
| AT2G26710.1 | c93255_g4_i5 | #N/A | −1.56 | #N/A | C7A29_PANGI | BR | CYP735A1 |
| AT5G38450.1 | c100283_g2_i2 | 0.67 | −0.86 | −0.94 | C14A1_ARATH | Cytokinin | CYP735A1 |
| AT2G36750.1 | c88918_g1_i2 | #N/A | −2.04 | −2.09 | SCGT_TOBAC | Cytokinin | UGT73C1 |
| AT2G36800.1 | c96045_g2_i1 | #N/A | −1.74 | #N/A | U91A1_ARATH | Cytokinin | UGT73C5, DOGT1 |
| AT1G22400.1 | c86370_g7_i2 | 1.71 | 1.58 | #N/A | UGT2_GARJA | Cytokinin | UGT85A1, ATUGT85A1 |
| AT1G22400.1 | c98889_g4_i2 | #N/A | −1.55 | #N/A | UGT2_GARJA | Cytokinin | UGT85A1, ATUGT85A1 |
| AT1G22400.1 | c98889_g4_i4 | #N/A | −3.08 | −4.88 | UGT2_GARJA | Cytokinin | UGT85A1, ATUGT85A1 |
| AT1G15550.1 | c89534_g1_i1 | #N/A | −4.28 | −1.52 | ACCO1_ORYSI | GA | GA4, ATGA3OX1, GA3OX1 |
| AT1G80340.1 | c93875_g1_i4 | #N/A | −1.06 | −1.5 | DIOX3_PAPSO | GA | ACO1, ATACO1 |
| AT4G25420.1 | c54669_g1_i1 | #N/A | −5.34 | #N/A | FL3H_PETCR | GA | ATGA20OX1, GA5, GA20OX1 |
| AT4G25420.1 | c81615_g1_i2 | #N/A | −6.7 | #N/A | FL3H_PETCR | GA | ACO1, ATACO1 |
| AT4G25420.1 | c94454_g1_i1 | 1.77 | 0.79 | −0.65 | FL3H_PETCR | GA | ACO1, ATACO1 |
| AT4G02780.1 | c97468_g5_i1 | #N/A | −0.89 | #N/A | NES2_FRAAN | GA | ATCPS1, CPS, CPS1, GA1 |
| AT4G21200.1 | c89719_g1_i1 | −1.61 | −2.04 | −1.75 | SILD_FORIN | GA | ACO1, ATACO1 |
| AT4G21200.1 | c89719_g1_i2 | #N/A | −3.02 | −1.21 | SILD_FORIN | GA | ATACO2, ACO2 |
| AT1G20510.1 | c72977_g1_i1 | #N/A | −2.01 | −1.42 | 4CL2_SOYBN | JA | OPCL1 |
| AT1G20510.1 | c98993_g2_i2 | #N/A | −0.96 | #N/A | 4CL2_SOYBN | JA | OPCL1 |
| AT2G27690.1 | c79501_g3_i1 | #N/A | −2.16 | #N/A | C86A2_ARATH | JA | CYP94C1 |
| AT2G27690.1 | c8721_g1_i1 | #N/A | −2.06 | −1.8 | C86A2_ARATH | JA | CYP94C1 |
| AT2G06050.2 | c98433_g1_i3 | #N/A | −0.14 | 0.43 | OPR11_ORYSJ | JA | OPR3, DDE1, ATOPR3 |
| AT1G22400.1 | c90644_g3_i6 | 2.8 | 2.44 | #N/A | KGLT_PETHY | SA | UGT85A1, ATUGT85A1 |
| AT2G23620.1 | c83239_g2_i1 | #N/A | −1.53 | #N/A | SABP2_TOBAC | SA | MES1, ATMES1 |
Log2FC Log2 fold change, #N/A no differential expression, CPM count per million reads, FDR false discovery rate