Table 5.
Grapevine candidate genes for phytoseiid abundance and trichome related traits
| Chra | Start position | Vitis gene nameb | Trichome-related gene name; function; Query id | Associated phenotype |
|---|---|---|---|---|
| 1 | 8,079,551 | VIT_201s0127g00730 | GL1 (GLABRA 1); transcription factor; NP_189430.1 | Phytoseiid, hair on blades |
| MYB23 (myb domain protein 23); DNA binding/transcription factor; NP_198849.1 | ||||
| 9,724,089 | VIT_201s0026g00850 | GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1 | Phytoseiid, domatia (rating), domatia (size), hair on blades, hair on veins | |
| ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding/transcription factor/zinc ion binding; NP_181725.1 | ||||
| 19,230,746 | VIT_201s0010g02270 | RGA1 (REPRESSOR OF GA1-3 1); transcription factor; NP_178266.1 | Phytoseiid, domatia (rating), bristles on blades, bristles on veins | |
| RGL1 (RGA-LIKE 1); transcription factor; NP_176809.1 | ||||
| 2 | 8,739,817 | VIT_02s0012g02030 | GL2 (GLABRA 2); DNA binding/transcription factor; NP_001185443.1 | Hair on veins |
| 5 | 1,128,866 | VIT_05s0077g01390 | GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1 | Hair on blades |
| 8 | 20,543,918 | VIT_208s0007g06870 | GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding/transcription factor/zinc ion binding; NP_191366.1 | Hair on blades |
| GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1 | Hair on blades | |||
| ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding/transcription factor/zinc ion binding; NP_181725.1 | Hair on blades | |||
| 20,865,263 | VIT_208s0007g07230 | MYB5; transcription repressor; NP_187963.1 | Hair on blades | |
| 15 | 13,245,041 | VIT_15s0021g02290 | SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding; NP_683267.1 | Domatia (size) |
| 13,256,743 | VIT_215s0021g02300 | SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding; NP_683267.1 | Domatia (size) | |
| 16,133,315 | VIT_15s0048g02000 | GL2 (GLABRA 2); DNA binding/transcription factor; NP_001185443.1 | Domatia (size), domatia (rating), bristles on blades | |
| 17,211,622 | VIT_215s0046g00170 | MYB5, transcription repressor; NP_187963.1 | Domatia (rating) | |
| 18,177,217 | VIT_215s0046g01130 | CPC (CAPRICE); DNA binding/transcription factor; AAS09991.1 | Domatia (rating) | |
| ETC2 (ENHANCER OF TRY AND CPC 2); DNA binding/transcription factor; NP_850145.1 | Domatia (rating) | |||
| ETC3 (ENHANCER OF TRY AND CPC 3); DNA binding/transcription factor; NP_974493.1 | Domatia (rating) | |||
| TCL1 (TRICHOMELESS1); DNA binding; NP_001031445.1 | Domatia (rating) | |||
| TCL2 (TRICHOMELESS2); NP_001118417.1 | Domatia (rating) | |||
| TRY (TRIPTYCHON); DNA binding transcription factor; NP_200132.2 | Domatia (rating) |
Candidate genes based on the PN40024 Vitis vinifera 12X.0 reference genome. Homologous Arabidopsis thaliana genes are indicated
aChr indicates the physical chromosome number
bVitis gene names come from annotations V1 and V2.1 from the CRIBI database37