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. 2019 Jul 21;6:87. doi: 10.1038/s41438-019-0169-8

Table 5.

Grapevine candidate genes for phytoseiid abundance and trichome related traits

Chra Start position Vitis gene nameb Trichome-related gene name; function; Query id Associated phenotype
1 8,079,551 VIT_201s0127g00730 GL1 (GLABRA 1); transcription factor; NP_189430.1 Phytoseiid, hair on blades
MYB23 (myb domain protein 23); DNA binding/transcription factor; NP_198849.1
9,724,089 VIT_201s0026g00850 GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1 Phytoseiid, domatia (rating), domatia (size), hair on blades, hair on veins
ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding/transcription factor/zinc ion binding; NP_181725.1
19,230,746 VIT_201s0010g02270 RGA1 (REPRESSOR OF GA1-3 1); transcription factor; NP_178266.1 Phytoseiid, domatia (rating), bristles on blades, bristles on veins
RGL1 (RGA-LIKE 1); transcription factor; NP_176809.1
2 8,739,817 VIT_02s0012g02030 GL2 (GLABRA 2); DNA binding/transcription factor; NP_001185443.1 Hair on veins
5 1,128,866 VIT_05s0077g01390 GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1 Hair on blades
8 20,543,918 VIT_208s0007g06870 GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding/transcription factor/zinc ion binding; NP_191366.1 Hair on blades
GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1 Hair on blades
ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding/transcription factor/zinc ion binding; NP_181725.1 Hair on blades
20,865,263 VIT_208s0007g07230 MYB5; transcription repressor; NP_187963.1 Hair on blades
15 13,245,041 VIT_15s0021g02290 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding; NP_683267.1 Domatia (size)
13,256,743 VIT_215s0021g02300 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding; NP_683267.1 Domatia (size)
16,133,315 VIT_15s0048g02000 GL2 (GLABRA 2); DNA binding/transcription factor; NP_001185443.1 Domatia (size), domatia (rating), bristles on blades
17,211,622 VIT_215s0046g00170 MYB5, transcription repressor; NP_187963.1 Domatia (rating)
18,177,217 VIT_215s0046g01130 CPC (CAPRICE); DNA binding/transcription factor; AAS09991.1 Domatia (rating)
ETC2 (ENHANCER OF TRY AND CPC 2); DNA binding/transcription factor; NP_850145.1 Domatia (rating)
ETC3 (ENHANCER OF TRY AND CPC 3); DNA binding/transcription factor; NP_974493.1 Domatia (rating)
TCL1 (TRICHOMELESS1); DNA binding; NP_001031445.1 Domatia (rating)
TCL2 (TRICHOMELESS2); NP_001118417.1 Domatia (rating)
TRY (TRIPTYCHON); DNA binding transcription factor; NP_200132.2 Domatia (rating)

Candidate genes based on the PN40024 Vitis vinifera 12X.0 reference genome. Homologous Arabidopsis thaliana genes are indicated

aChr indicates the physical chromosome number

bVitis gene names come from annotations V1 and V2.1 from the CRIBI database37