Table 2.
Differentially expressed transcripts (DETs) of the hormone and flowering genes identified from the comparison of leaf tissues of Mu-legacy and ‘Legacy’ plants
| Query id | Subject id | Blast_e-value | Pathway | Gene name | Annotation by trinotate | Log2(Mu-legacy/Legacy) 2018 data | Log2(Mu-legacy/Legacy–VcDDF1-OX) 2014 data | Log2(Mu-legacy-T1/Legacy) 2014 data | Log2(Legacy–VcDDF1-OX/Legacy) 2014 data | Log2(Mu-legacy/Legacy) 2014 data |
|---|---|---|---|---|---|---|---|---|---|---|
| c49456_g2_i2 | VcARP6 | ACTS_RAT | #N/A | −6.17 | −4.73 | #N/A | −5.98 | |||
| c66039_g1_i1 | nptII | KKA2_KLEPN | 10.29 | #N/A | 9.79 | 10.60 | 9.33 | |||
| c92529_g4_i2 | VcRR2 | ARR2_ARATH | 8.08 | 5.77 | 6.15 | #N/A | 6.06 | |||
| c32575_g1_i1 | VcDDF1 | DRE1E_ARATH | 10.28 | −3.49 | #N/A | 7.64 | 5.31 | |||
| c96767_g2_i12 | VcRR2 | – | 4.70 | 4.00 | 5.07 | #N/A | #N/A | |||
| AT2G27690.1 | c79501_g3_i1 | 4.00E−29 | JA | CYP94C1 | C96AF_ARATH | 1.42 | −2.34 | 3.16 | #N/A | #N/A |
| AT1G75450.1 | c83077_g1_i1 | 0 | Cytokinin | ATCKX6, ATCKX5, CKX5 | CKX5_ARATH | −1.62 | 2.00 | #N/A | #N/A | #N/A |
| AT2G23620.1 | c83935_g1_i1 | 6.00E−46 | SA | MES1, ATMES1 | MES17_ARATH | −0.97 | 1.18 | −1.61 | −0.82 | #N/A |
| AT2G23620.1 | c83935_g1_i2 | 2.00E−45 | SA | MES1, ATMES1 | MES17_ARATH | −0.79 | 1.26 | −1.44 | −0.90 | #N/A |
| AT2G23620.1 | c83935_g1_i3 | 8.00E−46 | SA | MES1, ATMES1 | MES17_ARATH | −0.75 | 1.27 | −1.68 | −0.82 | #N/A |
| AT2G43820.1 | c85921_g3_i2 | 2.00E−84 | SA | GT, ATSAGT1, SGT1, UGT74F2, SAGT1 | UGT1_GARJA | −0.68 | 1.34 | #N/A | #N/A | #N/A |
| AT3G11480.1 | c97521_g2_i1 | 2.00E−100 | SA | BSMT1, ATBSMT1 | – | −1.38 | −3.54 | #N/A | 1.31 | #N/A |
| AT4G25420.1 | c89942_g2_i1 | 5.00E−55 | GA | ATGA20OX1, AT2301, GA5, GA20OX1 | SRG1_ARATH | −0.86 | −1.37 | #N/A | #N/A | #N/A |
| AT4G02780.1 | c96791_g4_i1 | 0 | GA | ATCPS1, CPS, CPS1, GA1, ABC33 | KSA_PEA | 1.60 | 2.89 | 2.31 | #N/A | #N/A |
| AT1G13260.1 | c83982_g1_i1 | 8.00E−132 | Flower | RAV1, EDF4 | RAV1_ARATH | 1.35 | 3.07 | −4.66 | #N/A | #N/A |
| AT5G60910.1 | c88116_g1_i1 | 5.00E−91 | Flower | AGL8, FUL | AGL8_SOLTU | −2.38 | 4.23 | #N/A | #N/A | #N/A |
| AT4G02050.1 | c85501_g3_i2 | 8.00E−57 | Sucrose | STP7 | – | 1.57 | −1.62 | 1.52 | #N/A | #N/A |
| AT4G21480.1 | c85501_g3_i2 | 6.00E−54 | Sucrose | STP12 | – | 1.57 | −1.62 | 1.52 | #N/A | #N/A |
| AT1G10370.1 | c73618_g2_i1 | 1.00E−30 | Sucrose | ATGSTU17, ERD9, GST30B, GST30, GSTU17 | – | 3.04 | −1.97 | 3.23 | 1.66 | #N/A |
| AT3G57040.1 | c83921_g3_i2 | 3.00E−76 | ARR9, ATRR4 | ARR9_ARATH | −0.62 | #N/A | #N/A | #N/A | #N/A | |
| AT1G10470.1 | c86949_g1_i2 | 5.00E−41 | ARR4, MEE7, ATRR1, IBC7 | ARR9_ARATH | −0.64 | #N/A | #N/A | #N/A | #N/A |
Corresponding DETs identified from the comparisons of leaf tissues between Mu-legacy and Legacy–VcDDF1-OX, Mu-legacy-T1 and ‘Legacy’, Legacy–VcDDF1-OX and ‘Legacy’, and Mu-legacy and ‘Legacy’ from a 2014 study were also included for the cross-comparison of the 2018 and 2014 data. #N/A: No differential expression