Table 3.
Differentially expressed transcripts (DETs) of hormone genes identified in the transcriptome comparison between nonchilled flower bud (NB) of the Mu-legacy and ‘Legacy’ plants (2014 data)
| Query id | Subject id | Blast_e-value | Pathway | Gene name | Annotation by Trinotate | Legacy | Mu-legacy | Log2(Mu-legacy NB/ Legacy NB) | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Log2(CB/NB) | Log2(CB/LPB) | Log2(CB/NB) | Log2(CB/LPB) | |||||||
| c49456_g2_i2 | VcARP6 | ACTS_RAT | −8.91 | −9.43 | #N/A | −5.55 | 6.89 | |||
| c66039_g1_i1 | nptII | KKA2_KLEPN | #N/A | #N/A | #N/A | #N/A | −8.57 | |||
| c92529_g4_i2 | VcRR2 | ARR2_ARATH | #N/A | #N/A | #N/A | #N/A | −7.26 | |||
| c32575_g1_i1 | VcDDF1 | DRE1E_ARATH | −2.23 | −4.84 | #N/A | #N/A | −6.75 | |||
| c96767_g2_i12 | VcRR2 | – | #N/A | #N/A | #N/A | #N/A | −4.22 | |||
| AT5G45340.1 | c69424_g1_i1 | 2.00E−65 | ABA | CYP707A3 | ABAH3_ORYSI | 6.64 | 5.88 | 5.16 | 6.66 | −5.37 |
| AT3G19270.1 | c69424_g2_i1 | 5.00E−124 | ABA | CYP707A4 | ABAH4_ARATH | 5.66 | 7.72 | 5.16 | 10.15 | −5.08 |
| AT5G45340.1 | c69424_g2_i1 | 8.00E−100 | ABA | CYP707A3 | ABAH4_ARATH | 5.66 | 7.72 | 5.16 | 10.15 | −5.08 |
| AT3G19270.1 | c83950_g1_i2 | 0 | ABA | CYP707A4 | ABAH4_ARATH | 6.62 | −1.53 | 4.74 | #N/A | −4.77 |
| AT2G29090.1 | c83950_g1_i1 | 0 | ABA | CYP707A2 | – | 6.41 | −1.38 | 4.74 | #N/A | −4.60 |
| AT1G52400.1 | c91881_g1_i1 | 5.00E−89 | ABA | BGL1, ATBG1, BGLU18 | HIUH_SOYBN | 1.94 | −0.49 | #N/A | −2.51 | −1.67 |
| AT1G52400.1 | c80508_g1_i1 | 9.00E−134 | ABA | BGL1, ATBG1, BGLU18 | RG1_RAUSE | #N/A | #N/A | #N/A | −1.84 | −1.61 |
| AT1G52400.1 | c91881_g1_i2 | 7.00E−82 | ABA | BGL1, ATBG1, BGLU18 | HIUH_SOYBN | 1.38 | #N/A | #N/A | −2.03 | −1.18 |
| AT2G22330.1 | c85230_g2_i1 | 9.00E−56 | Auxin | CYP79B3 | C70A2_ARATH | 11.98 | 11.82 | 0.50 | 10.93 | −7.88 |
| AT4G31500.1 | c94863_g6_i2 | 1.00E−62 | Auxin | RNT1, RED1, SUR2, ATR4, CYP83B1 | C81E8_MEDTR | 2.75 | #N/A | #N/A | −2.87 | −1.85 |
| AT4G31500.1 | c93443_g1_i1 | 2.00E−65 | Auxin | RNT1, RED1, SUR2, ATR4, CYP83B1 | C81E8_MEDTR | 2.06 | 2.53 | #N/A | −1.19 | −1.40 |
| AT4G31500.1 | c93443_g1_i3 | 1.00E−65 | Auxin | RNT1, RED1, SUR2, ATR4, CYP83B1 | C81E8_MEDTR | 2.32 | 3.12 | #N/A | −1.59 | −1.20 |
| AT1G08980.1 | c89856_g5_i1 | 7.00E−163 | Auxin | ATAMI1, AMI1, TOC64-I, ATTOC64-I | AMI1_ARATH | #N/A | #N/A | #N/A | 0.66 | 0.66 |
| AT4G31500.1 | c83219_g1_i2 | 4.00E−43 | Auxin | RNT1, RED1, SUR2, ATR4, CYP83B1 | C78A5_ARATH | −1.36 | 4.08 | 0.54 | 2.46 | 1.05 |
| AT2G22330.1 | c90066_g1_i1 | 2.00E−47 | Auxin | CYP79B3 | C82A3_SOYBN | 0.95 | 4.97 | 0.56 | #N/A | 1.45 |
| AT5G11320.1 | c87553_g1_i1 | 7.00E−85 | Auxin | AtYUC4, YUC4 | YUC4_ARATH | −1.69 | 5.66 | #N/A | −1.54 | 1.91 |
| AT2G36800.1 | c93075_g2_i1 | 6.00E−88 | BR | UGT73C5, DOGT1 | – | 5.01 | #N/A | #N/A | 2.32 | −1.80 |
| AT2G26710.1 | c97437_g3_i3 | 1.00E−123 | BR | CYP734 A1, CYP72B1, BAS1 | C7A22_PANGI | 1.85 | #N/A | #N/A | −1.87 | −1.42 |
| AT1G17060.1 | c93255_g4_i4 | 8.00E−74 | BR | CHI2, SOB7, CYP72C1, SHK1 | C7A29_PANGI | #N/A | 2.51 | #N/A | −1.49 | −1.30 |
| AT2G26710.1 | c93255_g4_i5 | 9.00E−140 | BR | CYP734 A1, CYP72B1, BAS1 | C7A29_PANGI | #N/A | 2.74 | #N/A | −1.37 | −1.02 |
| AT2G26710.1 | c54735_g3_i1 | 6.00E−112 | BR | CYP734A1, CYP72B1, BAS1 | C72A1_CATRO | −2.01 | −7.66 | 6.67 | −7.85 | 3.35 |
| AT1G22400.1 | c92329_g1_i1 | 2.00E−52 | Cytokinin | UGT85A1, ATUGT85A1 | UFOG_VITVI | 5.36 | #N/A | #N/A | 1.15 | −3.31 |
| AT2G36800.1 | c93075_g2_i1 | 6.00E−88 | Cytokinin | UGT73C5, DOGT1 | – | 5.01 | #N/A | #N/A | 2.32 | −1.80 |
| AT5G11160.1 | c82929_g1_i1 | 5.00E−108 | Cytokinin | APT5 | APT5_ARATH | #N/A | #N/A | #N/A | 0.74 | 0.77 |
| AT5G11160.1 | c82929_g1_i2 | 2.00E−109 | Cytokinin | APT5 | APT5_ARATH | #N/A | #N/A | #N/A | #N/A | 1.28 |
| AT1G20510.1 | c79869_g1_i1 | 4.00E−103 | JA | OPCL1 | 4 CLL1_ARATH | 12.22 | 11.44 | #N/A | 11.67 | −7.33 |
| AT3G48520.1 | c93124_g4_i1 | 3.00E−95 | JA | CYP94B3 | C70B1_ARATH | 9.17 | 4.24 | #N/A | 5.56 | −5.99 |
| AT1G44350.1 | c91828_g2_i1 | 0 | JA | ILL6 | ILL6_ARATH | 2.55 | #N/A | −0.50 | −3.50 | −1.31 |
| AT5G07010.1 | c90152_g5_i1 | 4.00E−86 | JA | ST2A | SOT15_ARATH | 1.09 | 1.27 | #N/A | −1.66 | −0.94 |
Corresponding DETs identified from the other four transcriptome comparison of the flower bud tissues, including chilled (CB) vs. NB and chilled vs. late-pink bud (LPB) for ‘Legacy’ and Mu-legacy plants, respectively, were also included. #N/A: No differential expression