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. 2019 Sep 7;6:108. doi: 10.1038/s41438-019-0191-x

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — a Hypervariability based on BLAST is shown in the Circos plot. The loci positions in the SSC, LSC and/or IR regions are shown; the line reflects the region size, and the color is based on the BLASTn score (less similar: <0.25 to the very similar: >0.75). b Maximum likelihood (ML)-based phylogenetic analysis for each hypervariable locus is indicated on the complete set tree shown in Fig. 2a based on clustering match. Loci with intraspecific variation are indicated in red, strong candidates from the current study are indicated in white, and strong candidates from the literature are indicated in bold. c The final ML trees produced from the tested combinations to retrieve the complete set of phylogenetic signals are shown. Trees from left to right are the visual-based tree, Ktree-based tree, loci with interspecific variation (InDels included) and the latter set when InDels are excluded (*)