Table 2.
Upregulated and downregulated gene count comparisons of T66 vs. “M.26”
| Comparison | Upregulated | Downregulated | Total | ||
|---|---|---|---|---|---|
| (1) M26 vs. T166 | February | 498 | 1189 | 1687 | |
| March | 734 | 384 | 1118 | ||
| April | 1834 | 2177 | 4011 | ||
| July | 146 | 56 | 202 | ||
| (2) Time main effect | M26 | 7075 | 4394 | 11,469 | |
| T166 | 7090 | 4007 | 11,097 | ||
| (3) Month-to-Month | M26 | Feb–Mar | 1004 | 1809 | 2813 |
| Mar–Apr | 3399 | 2336 | 5735 | ||
| Apr–Jul | 3906 | 2043 | 5949 | ||
| T166 | Feb–Mar | 255 | 275 | 530 | |
| Mar–Apr | 3096 | 2419 | 5515 | ||
| Apr–Jul | 5918 | 4225 | 10,143 | ||
| (4) Time–strain interaction | 1888 | 895 | 2783 | ||
Comparisons include genotype–genotype, time main effect, month-to-month by genotype, and time–genotype interaction comparisons. Upregulated and downregulated gene counts are provided based on log2 fold-change >1 and log2 fold-change p-value < 0.05