TABLE 2.
CbsR12 target prediction using various algorithms
| Rank | Target gene (P)a
|
||
|---|---|---|---|
| TargetRNA2 | IntaRNA | CopraRNA | |
| 1 | CBU_1041 (0.001) | cvpD (0.000017) | cvpD (0.00001) |
| 2 | prlC (0.001) | CBU_0537 (0.00018) | CBU_0537 (0.000039) |
| 3 | suhB (0.001) | CBU_1161 (0.00018) | CBU_0922 (0.00053) |
| 4 | mutS (0.002) | CBU_0922 (0.00091) | CBU_0103 (0.00074) |
| 5 | bioD (0.003) | CBU_2028 (0.0012) | CBU_2028 (0.00078) |
| 6 | trmD (0.003) | CBU_0103 (0.0013) | rpsA (0.0013) |
| 7 | dnaA (0.005) | rpsA (0.0022) | metK (0.0014) |
| 8 | yciL (0.007) | metK (0.0023) | purH (0.0019) |
| 9 | metK (0.008) | purH (0.003) | CBU_1741 (0.0025) |
| 10 | CBU_0558 (0.01) | carA (0.015) | carA (0.0067) |
a
Target genes were identified through the indicated algorithms, as ranked. The calculated P values for each target are indicated. Genes involved in subsequent experiments are indicated in boldface type.