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. 2019 Oct 22;20:208. doi: 10.1186/s13059-019-1819-8

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© The Author(s) 2019

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 7 — The application of SEPATH pipelines on a range of cancer types. Output genera from Kraken (left) and mOTUs2 (right) human-depleted, quality-trimmed reads from whole genome sequencing files. n = 10 for each of cervical cancer (a, b), stomach cancer (c, d), and medulloblastoma (e, f). For display purposes, mOTUs2 results were filtered to show taxa that occurred in at least 3 samples. Kraken results were filtered for taxa that were in a minimum of 5 samples, or had a mean read count of over 5,000