Table 2.
Summary of the transcriptome assembly and quality assessment
Prior to de novo assembly | |
Length of raw reads (bp) | 75 |
Total number of raw reads | 522,296,142 |
Length of trimmed reads (bp) | 65 |
Total number of trimmed reads | 501,900,423 (96.09%) |
Total number of normalized reads | 51,971,920 (10.36%) |
After de novo assembly | |
Total number of contigs | 109,616 |
Total number of unigenes | 96,362 |
Mean length of unigenes (bp) | 776.73 |
N50 length of unigenes (bp) | 1308 |
Highest ExN50 value (% Ex) | 94 |
Fragment mapping rate (%) | 96.85% |
BUSCO completeness (%) | 83.4% |