Table 2.
The important signaling proteins that were identified
| Protein ID | Function description | Relative expression levela | ||
|---|---|---|---|---|
| S1 | S2 | S3 | ||
| Light signaling | ||||
| NNU_05425-RA | CSN4: COP9 signalosome complex subunit 4 | 1 | N/A | N/A |
| NNU_15063-RA | CSN5A: COP9 signalosome complex subunit 5a | N/A | 1 | N/A |
| NNU_08779-RA | CSN1: COP9 signalosome complex subunit 1 | N/A | N/A | 1 |
| NNU_09851-RA | PHYA: Phytochrome A | 1 | N/A | 0.85 |
| NNU_22076-RA | NDPK2: Nucleoside diphosphate kinase 2C chloroplastic | N/A | 1 | N/A |
| NNU_14358-RA | Similar to Nucleoside diphosphate kinase B | 1 | 1.19 | 0.71 |
| NNU_17592-RA | FYPP: Phytochrome-associated serine/threonine protein phosphatase | 1 | N/A | N/A |
| NNU_20168-RA | Similar to At1g80670: Rae1-like protein; may be involved in the formation of a CUL4-based E3 ubiquitin ligase | N/A | 1 | N/A |
| NNU_26357-RA | HY5: Transcription factor HY5 | N/A | 1 | N/A |
| NNU_11842-RA | Similar to EFL4: Protein ELF4-LIKE 4 | N/A | 1 | N/A |
| NNU_16002-RA | Similar to FRI: Protein FRIGIDA | N/A | 1 | N/A |
| NNU_13682-RA | ||||
| Calcium signaling | ||||
| NNU_15726-RA | Similar to VCX1: Vacuolar calcium ion transporter | N/A | N/A | 1 |
| NNU_15143-RA | Similar to ECA4: Calcium-transporting ATPase 2C endoplasmic reticulum-type | 1 | N/A | 1.16 |
| NNU_12400-RA | ||||
| NNU_05804-RA | Similar to Os12g0586600: Calcium-transporting ATPase 2C plasma membrane-type | 1 | N/A | N/A |
| NNU_04273-RA | Similar to CHERP: Calcium homeostasis endoplasmic reticulum protein | 1 | N/A | N/A |
| NNU_12646-RA | Similar to cbpP: Calcium-binding protein P | 1 | 1.46 | N/A |
| NNU_17533-RA | Similar to CALM1: Calmodulin | 1 | 1.11 | N/A |
| NNU_10822-RA | Similar to CAM-1: Calmodulin-1/11/16 | 1 | 1.22 | 1.58 |
| NNU_20726-RA | Similar to CAM72: Calmodulin-2 | N/A | N/A | 1 |
| NNU_01778-RA | Similar to CML6: Calmodulin-like protein 6 | 1 | 1.31 | 1.07 |
| NNU_23435-RA | Similar to CML11: Calmodulin-like protein 11 | N/A | N/A | 1 |
| NNU_06675-RA | Similar to CML13: Probable calcium-binding protein CML13 | 1 | 1.14 | 0.19 |
| NNU_08869-RA | ||||
| NNU_05884-RA | Similar to Calreticulin | 1 | 1.06 | 0.8 |
| NNU_02729-RA | Similar to CRT3: Calreticulin-3 | N/A | 1 | N/A |
| NNU_09020-RA | Similar to CNB1: Calcineurin subunit B | 1 | N/A | N/A |
| NNU_13577-RA | Similar to Caltractin | 1 | 1.42 | N/A |
| NNU_22365-RA | Similar to Calnexin homolog | 1 | 0.73 | 0.92 |
| NNU_13438-RA | Similar to ANN1: Annexin D1 | 1 | N/A | 1.24 |
| NNU_22480-RA | Similar to ANN2: Annexin D2 | 1 | N/A | 1 |
| NNU_01039-RA | Similar to ANN3: Annexin D3 | 1 | N/A | N/A |
| NNU_15418-RA | Similar to ANN4: Annexin D4 | 1 | N/A | N/A |
| NNU_14855-RA | Similar to ANN5: Annexin D5 | 1 | N/A | N/A |
| NNU_01040-RA | Similar to Annexin-like protein RJ4 | 1 | 1.4 | 2.65 |
| NNU_15823-RA | Similar to CPK2: Calcium-dependent protein kinase isoform 2 | 1 | N/A | N/A |
| NNU_03392-RA | ||||
| NNU_01413-RA | CPK3: Calcium-dependent protein kinase 3 | 1 | N/A | N/A |
| NNU_09473-RA | CPK4: Calcium-dependent protein kinase 4 | 1 | N/A | N/A |
| NNU_04896-RA | CPK11: Calcium-dependent protein kinase 11 | N/A | N/A | 1 |
| Auxin signaling | ||||
| NNU_23405-RA | Similar to Auxin-induced protein PCNT115 | 1 | 1.59 | 1.14 |
| NNU_10627-RA | ||||
| NNU_23183-RA | ||||
| NNU_23179-RA | ||||
| NNU_06219-RA | AXR4: Protein AUXIN RESPONSE 4 | N/A | N/A | 1 |
| NNU_11159-RA | Similar to Auxin-repressed 12.5 kDa protein | 1 | N/A | N/A |
| NNU_21253-RA | AIR12: Auxin-induced in root cultures protein 12 | N/A | N/A | 1 |
| NNU_02652-RA | Similar to At4g12780: Auxilin-related protein 1 | N/A | 1 | N/A |
| NNU_07873-RA | Similar to At4g12770: Auxilin-related protein 2 | N/A | 1 | N/A |
| NNU_14842-RA | Similar to IAR1: IAA-alanine resistance protein 1 | N/A | N/A | 1 |
| NNU_23868-RA | Similar to SKP1A: SKP1-like protein 1A | 1 | 2.39 | 1.43 |
| NNU_18445-RA | Similar to SKP1B: SKP1-like protein 1B | N/A | 1 | N/A |
| NNU_14125-RA | Similar to CUL1: Cullin-1 | N/A | N/A | 1 |
| NNU_05447-RA | Similar to RCE1: NEDD8-conjugating enzyme Ubc12 | 1 | 1.8 | 1.39 |
| NNU_16590-RA | ||||
| NNU_24561-RA | Similar to CAND1: Cullin-associated NEDD8-dissociated protein 1 | 1 | N/A | 3.33 |
| NNU_24562-RA | ||||
| NNU_06166-RA | Similar to ECR1: NEDD8-activating enzyme E1 catalytic subunit | 1 | N/A | N/A |
| NNU_03382-RA | Similar to AXR1: NEDD8-activating enzyme E1 regulatory subunit | N/A | N/A | 1 |
| NNU_04189-RA | ILL1: IAA-amino acid hydrolase ILR1-like 1 | 1 | 1 | 0.69 |
| NNU_25480-RA | ILL7: IAA-amino acid hydrolase ILR1-like 7 | N/A | N/A | 1 |
| 14–3-3-like proteins | ||||
| NNU_07652-RA | Similar to 14–3-3-like protein | 1 | 0.52 | 1.14 |
| NNU_00542-RA | ||||
| NNU_22679-RA | Similar to 14–3-3-like protein (Pisum sativum) | 1 | 0.4 | 1 |
| NNU_13400-RA | Similar to TFT7: 14–3-3 protein 7 | 1 | N/A | N/A |
| NNU_04500-RA | Similar to GRF12: 14–3-3-like protein GF14. Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. | 1 | 1 | N/A |
| NNU_00971-RA | Similar to GF14D: 14–3-3-like protein D | 1 | N/A | 0.5 |
| NNU_08512-RA | ||||
| NNU_13288-RA | Similar to GRF8: 14–3-3-like protein GF14 kappa | 1 | N/A | 1.28 |
aThe relative expression level was normalized within each protein itself. N/A, no detection