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. 2019 Oct 23;14(10):e0223520. doi: 10.1371/journal.pone.0223520

Table 3. List of abbreviations.

ITH Intratumor Heterogeneity tITH Transcriptomic Intratumor Heterogeneity
sITH Spliceomic Intratumor Heterogeneity SMRT-seq Single Molecule Real Time Sequencing
RNA-seq RNA sequencing cDNA Complementary DNA
TCGA The Cancer Genome Atlas KLD Kullback-Leibler Divergence
CNV Copy Number Variation NCBI National Center for Biotechnology Information
WGS Whole-genome Sequencing RefSeq NCBI Reference Sequence Database
gITH Genomic Intratumor Heterogeneity KEGG Kyoto Encyclopedia of Genes and Genomes
SRA NCBI Sequence Read Archive JSD Jensen-Shannon Divergence
NT Normal Tissue PT Primary Tumor Tissue
STAGE Cancer Stage SURVIVAL Survival Outcome
PAM50 PAM50 Breast Cancer Subtyping System BRCA Breast Invasive Carcinoma
KIPAN Pan-kidney Cohort GBMLGG Glioma
STES Esophagus-Stomach Cancers HNSC Head and Neck Squamous Cell Carcinoma
LUAD Lung Adenocarcinoma LUSC Lung Squamous Cell Carcinoma
THCA Thyroid Carcinoma PRAD Prostate Adenocarcinoma
BLCA Bladder Urothelial Carcinoma COADREAD Colorectal Adenocarcinoma
LIHC Liver Hepatocellular Carcinoma CESC Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma
SARC Sarcoma PCPG Pheochromocytoma and Paraganglioma
PAAD Pancreatic Adenocarcinoma UCEC Uterine Corpus Endometrial Carcinoma
THYM Thymoma SKCM Skin Cutaneous Melanoma
CHOL Cholangiocarcinoma OV Ovarian Serous Cystadenocarcinoma
LAML Acute Myeloid Leukemia TGCT Testicular Germ Cell Tumors
MESO Mesothelioma UVM Uveal Melanoma
ACC Adrenocortical Carcinoma UCS Uterine Carcinosarcoma
DLBC Lymphoid Neoplasm Diffuse Large B-cell Lymphoma