Table 3.
Gene | Name | Sequence | Source | Protocol |
|||||
---|---|---|---|---|---|---|---|---|---|
ID | D | A | E | C | F | ||||
per | per5 | GCCTTCAGATACGGTCAAAC | Williams and Villet (2013) | 94 °C 5min | 94 °C 30s | 50 °C 1min | 72 °C 30s | x36 | 72 °C 7min |
perreverse | CCGAGTGTGGTTTGGAGATT | ||||||||
pbf14 | GGCGTTGTCAAGCTCTAGC | this study | 94 °C 5min | 94 °C 30s | 48 °C 1min | 72 °C 30s | x36 | 72 °C 7min | |
pbf650-R | CCACGAATGTGAACCAACTC | ||||||||
p249 | GCAAACCAGTAACAGCACCT | ||||||||
p433-R | GTGCCTGTACCGGTGTTG | ||||||||
COX1 | LCO1490 | GGTCAACAAATCATAAAGATATTGG | Folmer et al. (1994) | 94 °C 5min | 95 °C 30s | 45 °C 30s | 72 °C 1min | x35 | 72 °C 7min |
HCO2198 | TAAACTTCAGGGTGACCAAAAAATCA | ||||||||
ITS2 | ITS4 | TCCTCCGCTTATTGATATGC | White et al. (1990) | *94 °C 2min | 94 °C 30s | 44 °C 35s | 72 °C 30s | x38 | 72 °C 3min |
ITS5.8 | GGGACGATGAAGAACGCAGC |
*ID = initial denaturation step, D = denaturation, A = annealing, E = extension, C = cycles of D-A-E, F = final extension.