Table 2.
List of 43 genes differentially expressed between all samples originating from all apomictic versus sexual nucellar tissues isolated by laser-assisted microdissection
| Gene locus* | GO terms | Arabidopsis gene locus | Arabidopsis gene name | Arabidopsis gene/ protein description |
|---|---|---|---|---|
| (A) DEGs up-regulated in apomictic accessions | ||||
| Bostr.26527s0134 | GO:0030246, GO:0005975, GO:0004553 | At5G20710 | BGAL7 | Beta-galactosidase 7 |
| Bostr.7867s0569 | GO:0046872 | At4G27470 | AtRMA3, RMA3 | RING membrane-anchor 3 |
| Bostr.25375s0042 | NA | At1G64290 | NA | F-box protein-related |
| Bostr.15697s0319 | NA | At1G30790 | NA | F-box and associated interaction domains-containing protein |
| Bostr.15697s0321 | NA | At1G32660 | NA | F-box and associated interaction domains-containing protein |
| Bostr.13129s0275 | NA | NA | NA | NA |
| Bostr.29044s0001 | NA | At5G36710 | NA | NA |
| Bostr.3288s0214 | GO:0033177, GO:0015991, GO:0015078 | At1G19910 | AtVHA-C2, AVA-2PE, AVA-P2 | ATPase, F0/V0 complex, subunit C protein |
| Bostr.2983s0066 | GO:0005515 | At4G05310 | NA | Ubiquitin-like superfamily protein |
| Bostr.15697s0461 | GO:0046872 | At1G31480 | SGR2 | Shoot gravitropism 2 (SGR2) |
| Bostr.0568s0078 | GO:0008270 | At5G17890 | CHS3, DAR4 | DA1-related protein 4 |
| Bostr.0697s0107 | NA | At4G10400 | NA | F-box/RNI-like/FBD-like domains-containing protein |
| Bostr.26833s0971 | NA | NA | NA | NA |
| Bostr.19424s0775 | NA | NA | NA | NA |
| Bostr.10058s0023 | GO:0008168 | At4G00740 | NA | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Bostr.13158s0243 | GO:0055114, GO:0009396, GO:0004488, GO:0003824 | At4G00620 | NA | Amino acid dehydrogenase family protein |
| Bostr.26959s0357 | GO:0055114, GO:0009396, GO:0004488, GO:0003824 | At4G00620 | NA | Amino acid dehydrogenase family protein |
| Bostr.7305s0030 | NA | At5G52390 | NA | PAR1 protein |
| Bostr.18351s0192 | GO:0005515 | At2G17310 | SON1 | F-box and associated interaction domains-containing protein |
| Bostr.3279s0010 | GO:0010468, GO:0005777 | At4G30760 | NA | Putative endonuclease or glycosyl hydrolase |
| Bostr.26833s0821 | NA | At5G54510 | DFL1, GH3.6 | Auxin-responsive GH3 family protein |
| Bostr.5022s0132 | NA | At2G21140 | AtPRP2, PRP2 | Proline-rich protein 2 |
| Bostr.25993s0534 | NA | At2G42480 | NA | TRAF-like family protein |
| Bostr.13158s0246 | GO:0055114, GO:0009396, GO:0004488, GO:0003824 | At4G00620 | NA | Amino acid dehydrogenase family protein |
| Bostr.13671s0276 | GO:0000062 | At1G31812 | ACBP, ACBP6 | Acyl-CoA-binding protein 6 |
| (B) DEGs up-regulated in sexual accessions: | ||||
| Bostr.13129s0114 | GO:0005515, GO:0003677 | At5G08430 | NA | SWIB/MDM2 domain; Plus-3; GYF |
| Bostr.26959s0127 | NA | At1G67800 | NA | Copine (Calcium-dependent phospholipid-binding protein) family |
| Bostr.7867s0507 | GO:0005975, GO:0004553 | At4G26830 | NA | O-Glycosyl hydrolases family 17 protein |
| Bostr.12396s0001 | GO:0055114, GO:0051287, GO:0016616 | At1G26570 | ATUGD1, UGD1 | UDP-glucose dehydrogenase 1 |
| Bostr.7867s1023 | GO:0003677 | At4G31680 | NA | Transcriptional factor B3 family protein |
| Bostr.18351s0250 | GO:0007165, GO:0000155, GO:0000160 | At2G17820 | AHK1, ATHK1, HK1 | Histidine kinase 1 |
| Bostr.7867s1594 | GO:0055114, GO:0020037, GO:0016705, GO:0005506 | At4G37330 | CYP81D4 | Cytochrome P450, family 81, subfamily D, polypeptide 4 |
| Bostr.0697s0084 | GO:0055085, GO:0016021 | At3G54700 | PHT1;7 | Phosphate transporter 1;7 |
| Bostr.26833s0862 | GO:0016758, GO:0008152 | At3G21790 | NA | UDP-Glycosyltransferase superfamily protein |
| Bostr.15774s0342 | GO:0055114, GO:0016614, GO:0050660 | At5G51950 | NA | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| Bostr.2021s0098 | NA | NA | NA | NA |
| Bostr.29223s0097 | NA | At1G64230 | UBC28 | Ubiquitin-conjugating enzyme 28 |
| Bostr.2618s0047 | GO:0005975, GO:0004553 | At5G17500 | NA | Lycosyl hydrolase superfamily protein |
| Bostr.15697s0040 | NA | NA | NA | NA |
| Bostr.7867s0172 | NA | At1G25290 | AtRBL10, RBL10 | RHOMBOID-like protein 10 |
| Bostr.26833s0734 | NA | At5G55240 | AtPXG2 | ARABIDOPSIS THALIANA PEROXYGENASE 2 |
| Bostr.25993s0569 | NA | At3G53750 | ACT3 | Actin 3 |
| Bostr.3751s0034 | NA | At5G40680 | NA | Galactose oxidase/kelch repeat superfamily protein |
*Boechera stricta gene locus., Arabidopsis homologues are based on genome annotations by Lee et al. (2017). DEGs are ordered according to Supplementary Table S7 (sheet 1) and those identified consistently in both analyses are highlighted in bold. NA, no available information.