Fig. 3.

AP2/EREBP-like and MADS-box transcription factors change expression between IM and DM. For each family, we plotted genes that were in the top 10% of all genes by absolute L₂FC between IM and DM, without filtering on adjusted P-value. Genes in the upper panels had higher expression at the DM stage, whilst genes in the lower panels had higher expression at the IM stage. Most AP2/EREBP-like genes that pass the 10% cutoff were more highly expressed in the IM. AP2/EREBP-like genes that were more highly expressed in IM mainly belong to the ERF and DREB clades. In contrast, most MADS-box genes that pass the cutoff were more highly expressed at the DM stage. Clades for AP2/EREBP-like genes are from the Plant Transcription Factor Database v4.0 (Jin et al., 2017) and Sharoni et al. (2011). MADS-box clades were manually tabulated from Arora et al. (2007).