Table 4.
The GWAS results at genome significant level for FI of different parities using imputed WGS data (allelic R 2 > 0.8) in pigs.
| Trait | Chr | Range of SNP (Mb) | Number of SNP | Top SNP position (bp) | Allelic R 2 | n_miss | Alleles | Allele frequency | Candidate gene | P |
|---|---|---|---|---|---|---|---|---|---|---|
| FI_Y12 | 2 | 136.11–136.15 | 10 | 136,127,645 | 1.00 | 0 | A/G | 0.012 | 1.54E-09 | |
| FI_Y12 | 5 | 103.41–103.45 | 3 | 103,426,443 | 0.96 | 0 | A/C | 0.012 | 5.44E-13 | |
| FI_Y12 | 6 | 27.79–27.83 | 1 | 27,811,226 | 0.93 | 0 | A/G | 0.02 | C16orf70/B3GNT9/TRADD/HSF4/NOL3/KIAA0895L/EXOC3L1 | 3.44E-08 |
| FI_Y12 | 10 | 3.59–3.63 | 4 | 3,609,429 | 0.88 | 0 | T/C | 0.026 | 3.66E-11 | |
| FI_Y12 | 14 | 15.18–15.22 | 6 | 15,199,253 | 0.99 | 0 | A/G | 0.024 | 6.32E-08 | |
| FI_Y12 | 15 | 150.28–150.32 | 3 | 150,297,519 | 0.98 | 0 | T/C | 0.018 | 3.82E-13 |
Chr, chromosome; range of SNP, range of significant chromosome region; number of SNP, number of SNP involved; allelic R2, estimated correlation between the imputed and true genotypes; n_miss, number of missing values of the SNP; alleles, alleles of top SNP.