Table 2.
Alignment summary statistics for 28 amplified chloroplast regions in Thalictrum and relatives.
| Locus | Thalictrum | Thalictrum + Aquilegia + Leptopyrum + Paraquilegia | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Alignment length, bp | No. of sequences | Sequence length range, bp (mean) | Pairwise identity, % | Variable sites, bp (PI) | Alignment length, bp | No. of sequences | Sequence length range, bp (mean) | Pairwise identity, % | Variable sites, bp (PI) | |
| thal‐13 | 515 | 75 | 509–515 (509) | 99.50 | 28 (12) | 531 | 78 | 509–522 (509) | 99.40 | 42 (14) |
| thal‐15 | 605 | 75 | 434–544 (525) | 93.70 | 85 (36) | 632 | 78 | 434–544 (524) | 93.00 | 128 (45) |
| thal‐44 | 496 | 53 | 466–479 (473) | 98.50 | 33 (20) | 500 | 55 | 457–479 (472) | 98.10 | 45 (22) |
| thal‐45 | 372 | 75 | 372–372 (372) | 99.00 | 24 (15) | 372 | 77 | 345–372 (371) | 98.50 | 30 (15) |
| thal‐46 | 615 | 74 | 500–561 (521) | 96.10 | 142 (34) | 630 | 76 | 500–561 (520) | 95.80 | 152 (43) |
| thal‐47 | 658 | 75 | 150–554 (518) | 83.50 | 195 (140) | 725 | 78 | 150–554 (518) | 83.40 | 218 (150) |
| thal‐50 | 545 | 75 | 499–517 (506) | 97.50 | 30 (14) | 556 | 77 | 495–517 (506) | 97.20 | 43 (14) |
| thal‐51 | 594 | 73 | 461–557 (512) | 85.20 | 190 (140) | 599 | 75 | 461–557 (511) | 85.20 | 197 (142) |
| thal‐52 | 381 | 75 | 366–377 (370) | 99.60 | 16 (11) | 571 | 77 | 366–558 (372) | 98.10 | 45 (11) |
| thal‐53 | 585 | 15 | 469–560 (520) | 85.60 | 126 (78) | NA | NA | NA | NA | NA |
| thal‐54 | 567 | 72 | 505–558 (514) | 98.30 | 76 (17) | 575 | 73 | 505–558 (514) | 98.20 | 78 (18) |
| thal‐55 | 504 | 40 | 474–495 (486) | 97.30 | 28 (19) | 524 | 41 | 474–501 (486) | 97.10 | 32 (19) |
| thal‐57 | 495 | 73 | 464–480 (473) | 99.00 | 36 (23) | 496 | 75 | 464–480 (473) | 98.90 | 45 (25) |
| thal‐58 | 568 | 74 | 482–556 (485) | 98.10 | 39 (19) | 573 | 75 | 458–556 (485) | 97.90 | 48 (21) |
| thal‐59 | 524 | 74 | 518–524 (524) | 99.40 | 33 (18) | 524 | 77 | 518–524 (524) | 99.20 | 53 (18) |
| thal‐61 | 590 | 70 | 532–553 (552) | 96.10 | 153 (107) | 591 | 72 | 532–553 (552) | 96.00 | 165 (110) |
| thal‐62 | 519 | 75 | 519–519 (519) | 99.80 | 9 (7) | 525 | 78 | 519–525 (519) | 99.70 | 29 (7) |
| thal‐64 | 335 | 72 | 335–335 (335) | 98.50 | 50 (30) | 335 | 74 | 335–335 (335) | 98.40 | 58 (36) |
| thal‐65 | 579 | 75 | 496–563 (504) | 96.80 | 77 (34) | 586 | 78 | 496–563 (504) | 96.70 | 93 (39) |
| thal‐68 | 456 | 73 | 447–456 (456) | 98.90 | 47 (29) | 474 | 76 | 447–468 (456) | 98.60 | 71 (38) |
| thal‐69 | 616 | 72 | 521–558 (545) | 96.00 | 96 (64) | 620 | 75 | 462–558 (544) | 95.30 | 111 (62) |
| thal‐70 | 436 | 75 | 436–436 (436) | 99.20 | 38 (20) | 436 | 78 | 436–436 (436) | 99.00 | 52 (24) |
| thal‐72 | 658 | 68 | 530–556 (542) | 97.10 | 66 (30) | 662 | 70 | 530–556 (542) | 96.70 | 103 (42) |
| thal‐74 | 495 | 74 | 454–488 (482) | 98.40 | 38 (21) | 593 | 76 | 454–560 (483) | 97.60 | 50 (21) |
| thal‐75 | 488 | 75 | 249–480 (477) | 97.70 | 104 (15) | 486 | 78 | 249–480 (477) | 97.80 | 82 (23) |
| thal‐78 | 508 | 73 | 469–502 (484) | 98.10 | 54 (33) | 556 | 75 | 469–502 (485) | 97.50 | 83 (35) |
| thal‐80 | 460 | 72 | 454–460 (460) | 98.10 | 105 (40) | 460 | 73 | 454–460 (460) | 97.90 | 118 (44) |
| thal‐81 | 545 | 71 | 502–545 (529) | 97.40 | 121 (62) | 551 | 74 | 502–545 (529) | 97.00 | 146 (67) |
PI = parsimony informative; NA= not applicable.