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. Author manuscript; available in PMC: 2020 Jul 16.
Published in final edited form as: Immunity. 2019 Jun 20;51(1):119–130.e5. doi: 10.1016/j.immuni.2019.05.010
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Fc Block BD Cat#553142
CD45 (30-F11) BD Cat#564279
EPCAM (G8.8) Biolegend Cat#118216
CD31 (MEC13.3) BD Cat#565097
CD11b (M1/70; 1:200–1:600) Biolegend/BD Cat#101255/Cat#564443
F4/80 (BM8) eBioscience Cat#17–4801-82
ICAM2 (3C4) Biolegend Cat#105612
PDGFRa (APA5) Biolegend/BD Cat#135906/Cat#740269
PDPN (8.1.1; 1:800) Biolegend Cat#127410
CD19 (6D5) Biolegend Cat#115520
Ly6C (HK1.4; 1:400) Ebioscience Cat#53–5932-82
Ly6G (1A8; 1:400) Biolegend Cat#127624
MHCII (M5/114.15.2) Ebioscience Cat#25–5321-82
SIGLEC F (E50–2440) BD Cat#565527
GR1 (RB68C5; 1:400). Biolegend Cat#108424
Human HB-EGF (DTR; 1:100) R&D Systems Cat#BAF259
Streptavidin BUV396 (1:400) BD Cat#564176
GATA6 PE (1:50) CST Cat#26452S
Isotype PE (1:100) CST Cat#5742S
Fixable Violet Dead Cell Stain Kit Thermofisher Cat#L34963
Calcein Blue, AM Thermofisher Cat#C1429
Chemicals, Peptides, and Recombinant Proteins
All trans retinoic acid Tocris Cat#0695
Retinol Sigma Cat#95144
BMS493 Tocris Cat#3509
MCSF R&D systems Cat#416-ML
Dichloromethane Honeywell Burdick & Jackson Cat#494453
Methanol Fisher Chemical Cat#10675112
RNase Inhibitor Applied Biosystems Cat#N8080119
TaqMan Fast Advanced Master Mix ThermoFisher Cat#4444557
Diphtheria toxin EMD Millipore Cat#322326
Giemsa stain, modified Sigma Cat#GS500
Wright stain Sigma Cat#WSGD128
RNase Inhibitor Applied Biosystems Cat#N8080119
TRIZOL Invtirogen Cat#15596026
Collagenase P Roche Cat#11249002001
Dispase Life Technologies Cat#17105041
DNAse Roche Cat#10104159001
Optiprep Sigma Cat#D1556
RLT Buffer QIAGEN Cat#79216
Critical Commercial Assays
High Capacity cDNA Reverse Transcription Kit Applied Biosystems Cat#4368814
RNeasy Plus Mini Kit Qiagen Cat#74134
SMARTer Ultra Low Input RNA Kit for Sequencing Clontech Cat#634848
Aldefluor Assay STEMCELL Technologies Cat#01700
Deposited Data
FACS-sorted fibroblasts from lymph node, spleen, bone, brown adipose, inguinal adipose, omentum, mesentery, pancreas and FACS-sorted mesothelial cells from omentum, mesentery and epididymal adipose GSE130813
In vitro LCM, Wt1+ stromal cells and ex vivo LCM GSE130815
Experimental Models: Cell Lines
RARα-luciferase reporter cells BPS bioscience Cat#60503
Experimental Models: Organisms/Strains
Mouse: C57BL/6J Jackson Laboratory Cat#00064
Mouse: Wt1eGFP.cre Jackson Laboratory / Genentech Cat#010911
Mouse: Constitutive GFP+ Jackson Laboratory Cat#006567
Mouse: IL6−/− Jackson Laboratory Cat#002650
Mouse: Lyz2cre;Gata6fl/fl Gautier et al., 2014 N/A
Mouse: Adiponectincre;Rosa26LSL.DTA Wu et al., 2018 N/A
Mouse: Wt1eGFP.cre;Rosa26LSL.DTR This paper N/A
Mouse: Wt1eGFP.cre;Rosa26LSL.mKATE2 This paper N/A
Oligonucleotides
Aldh1a1 ThermoFisher Cat#Mm00657317_m1
Aldh1a2 ThermoFisher Cat#Mm00501306_m1
Gapdh ThermoFisher Cat#Mm99999915_g1
Wt1 ThermoFisher Cat#Mm01337048_m1
Software and Algorithms
Transcript-level gene expression Patro et al., 2017 Salmon
Differential expression analysis Law et al., 2014 limma/voom
FlowJo v9.8.1 FlowJo, LLC www.flowjo.com
Prism 8.1.0 GraphPad Software www.graphpad.com
Other
Transwell inserts (0.4µM) Costar Cat#3413