Antibodies |
Fc Block |
BD |
Cat#553142 |
CD45 (30-F11) |
BD |
Cat#564279 |
EPCAM (G8.8) |
Biolegend |
Cat#118216 |
CD31 (MEC13.3) |
BD |
Cat#565097 |
CD11b (M1/70; 1:200–1:600) |
Biolegend/BD |
Cat#101255/Cat#564443 |
F4/80 (BM8) |
eBioscience |
Cat#17–4801-82 |
ICAM2 (3C4) |
Biolegend |
Cat#105612 |
PDGFRa (APA5) |
Biolegend/BD |
Cat#135906/Cat#740269 |
PDPN (8.1.1; 1:800) |
Biolegend |
Cat#127410 |
CD19 (6D5) |
Biolegend |
Cat#115520 |
Ly6C (HK1.4; 1:400) |
Ebioscience |
Cat#53–5932-82 |
Ly6G (1A8; 1:400) |
Biolegend |
Cat#127624 |
MHCII (M5/114.15.2) |
Ebioscience |
Cat#25–5321-82 |
SIGLEC F (E50–2440) |
BD |
Cat#565527 |
GR1 (RB68C5; 1:400). |
Biolegend |
Cat#108424 |
Human HB-EGF (DTR; 1:100) |
R&D Systems |
Cat#BAF259 |
Streptavidin BUV396 (1:400) |
BD |
Cat#564176 |
GATA6 PE (1:50) |
CST |
Cat#26452S |
Isotype PE (1:100) |
CST |
Cat#5742S |
Fixable Violet Dead Cell Stain Kit |
Thermofisher |
Cat#L34963
|
Calcein Blue, AM |
Thermofisher |
Cat#C1429 |
Chemicals, Peptides, and Recombinant Proteins |
All trans retinoic acid |
Tocris |
Cat#0695 |
Retinol |
Sigma |
Cat#95144 |
BMS493 |
Tocris |
Cat#3509 |
MCSF |
R&D systems |
Cat#416-ML |
Dichloromethane |
Honeywell Burdick & Jackson |
Cat#494453 |
Methanol |
Fisher Chemical |
Cat#10675112 |
RNase Inhibitor |
Applied Biosystems |
Cat#N8080119 |
TaqMan Fast Advanced Master Mix |
ThermoFisher |
Cat#4444557 |
Diphtheria toxin |
EMD Millipore |
Cat#322326 |
Giemsa stain, modified |
Sigma |
Cat#GS500 |
Wright stain |
Sigma |
Cat#WSGD128 |
RNase Inhibitor |
Applied Biosystems |
Cat#N8080119 |
TRIZOL |
Invtirogen |
Cat#15596026 |
Collagenase P |
Roche |
Cat#11249002001 |
Dispase |
Life Technologies |
Cat#17105041 |
DNAse |
Roche |
Cat#10104159001 |
Optiprep |
Sigma |
Cat#D1556 |
RLT Buffer |
QIAGEN |
Cat#79216 |
Critical Commercial Assays |
High Capacity cDNA Reverse Transcription Kit |
Applied Biosystems |
Cat#4368814 |
RNeasy Plus Mini Kit |
Qiagen |
Cat#74134 |
SMARTer Ultra Low Input RNA Kit for Sequencing |
Clontech |
Cat#634848 |
Aldefluor Assay |
STEMCELL Technologies |
Cat#01700 |
Deposited Data |
FACS-sorted fibroblasts from lymph node, spleen, bone, brown adipose, inguinal adipose, omentum, mesentery, pancreas and FACS-sorted mesothelial cells from omentum, mesentery and epididymal adipose |
|
GSE130813 |
In vitro LCM, Wt1+ stromal cells and ex vivo LCM |
|
GSE130815 |
Experimental Models: Cell Lines |
RARα-luciferase reporter cells |
BPS bioscience |
Cat#60503 |
Experimental Models: Organisms/Strains |
Mouse: C57BL/6J |
Jackson Laboratory |
Cat#00064 |
Mouse: Wt1eGFP.cre
|
Jackson Laboratory / Genentech |
Cat#010911 |
Mouse: Constitutive GFP+
|
Jackson Laboratory |
Cat#006567 |
Mouse: IL6−/−
|
Jackson Laboratory |
Cat#002650 |
Mouse: Lyz2cre;Gata6fl/fl
|
Gautier et al., 2014 |
N/A |
Mouse: Adiponectincre;Rosa26LSL.DTA
|
Wu et al., 2018 |
N/A |
Mouse: Wt1eGFP.cre;Rosa26LSL.DTR
|
This paper |
N/A |
Mouse: Wt1eGFP.cre;Rosa26LSL.mKATE2
|
This paper |
N/A |
Oligonucleotides |
Aldh1a1 |
ThermoFisher |
Cat#Mm00657317_m1 |
Aldh1a2 |
ThermoFisher |
Cat#Mm00501306_m1 |
Gapdh |
ThermoFisher |
Cat#Mm99999915_g1 |
Wt1 |
ThermoFisher |
Cat#Mm01337048_m1 |
Software and Algorithms |
Transcript-level gene expression |
Patro et al., 2017 |
Salmon |
Differential expression analysis |
Law et al., 2014 |
limma/voom |
FlowJo v9.8.1 |
FlowJo, LLC |
www.flowjo.com |
Prism 8.1.0 |
GraphPad Software |
www.graphpad.com |
Other |
Transwell inserts (0.4µM) |
Costar |
Cat#3413 |