Table 3.
Characteristics of the seven datasets used for parsimony analysis.
| Dataseta | No. of taxa | Aligned lengthb | Variable sites (percentage of aligned length) | Informative sites (percentage of aligned length) | No. of MP trees | Tree length | Consistency index | Retention index |
|---|---|---|---|---|---|---|---|---|
| Large single copy | 48 | 77968 bp | 36926 bp (47.36%) | 24041 bp (30.83%) | 1 | 93269 | 0.5850 | 0.6891 |
| Small single copy | 48 | 18551 bp | 11030 bp (60.93%) | 7645 bp (41.21%) | 2 | 32922 | 0.5409 | 0.6496 |
| Inverted repeats | 48 | 24318 bp | 5713 bp (23.49%) | 2066 bp (8.50%) | 3 | 8245 | 0.8018 | 0.7851 |
| Coding regions | 48 | 74772 bp | 24741 bp (33.09%) | 15204 bp (20.33%) | 2 | 58454 | 0.5803 | 0.6834 |
| Intergenic spacers | 48 | 31036 bp | 21476 bp (69.20%) | 14081 bp (45.37%) | 1 | 58731 | 0.5841 | 0.6781 |
| Introns | 48 | 14373 bp | 6755 bp (47.00%) | 3979 bp (27.68%) | 1 | 15648 | 0.6182 | 0.7007 |
| Complete cp genome | 48 | 120181 bp | 52972 bp (44.08%) | 33264 bp (27.68%) | 1 | 120181 | 0.5860 | 0.6825 |
aOnly one IR region was used for analyses.
bWith removal of ambiguous alignments.