Table 1.
Identification of up-regulated DEGs at initial (May) and rapid (July) thickening stages of P. notoginseng taproots
| ID | Description | TAIR ID | RPKM | |||
|---|---|---|---|---|---|---|
| Mar | May | Jul | Nov | |||
| Carbohydrate and storage metabolism | ||||||
| Unigene0007855 | RNase-like major storage protein | AT2G02990 | 22.3 | 3071.0 | 129,797.0 | 44,296.7 |
| Unigene0036675 | RNase-like major storage protein | AT2G02990 | 25.6 | 5736.2 | 140,415.0 | 48,725.4 |
| Unigene0001769 | Beta-amylase 5 | AT4G15210 | 55.9 | 3345.0 | 11,618.7 | 4698.6 |
| Unigene0035964 | Alpha-1,4 glucan phosphorylase L isozyme | AT3G29320 | 8.4 | 302.2 | 728.3 | 570.6 |
| Unigene0011567 | Starch branching enzyme I | AT2G36390 | 18.4 | 259.8 | 1087.5 | 850.9 |
| Unigene0036902 | Vacuolar protein sorting-associated protein 32 homolog 2 | AT4G29160 | 8.1 | 194.4 | 426.2 | 369.6 |
| Signal transduction and transcription | ||||||
| Unigene0032604 | Protein phosphatase 2C 37-like | AT3G11410 | 11.9 | 19.1 | 53.7 | 77.2 |
| Unigene0014980 | Two-component response regulator-like APRR7 | AT5G53420 | 20.5 | 39.0 | 209.9 | 90.9 |
| Unigene0011239 | DA1-related protein 5 | AT5G62580 | 18.6 | 26.4 | 38.4 | 29.5 |
| Secondary metabolism | ||||||
| Unigene0034150 | GBR5 | / | 208.3 | 357.5 | 810.6 | 601.6 |
| Unigene0036783 | Heterodimeric geranylgeranyl pyrophosphate synthase small subunit | AT4G38460 | 23.6 | 232.5 | 1157.4 | 282.1 |
| Undefined | ||||||
| Unigene0002182 | Aspartate, glycine, lysine and serine-rich protein | AT5G20190 | 29.0 | 118.0 | 207.9 | 403.3 |