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. 2019 Oct 28;20:224. doi: 10.1186/s13059-019-1829-6

Fig. 1.

Fig. 1

The RaGOO pipeline. a Contigs are aligned to the reference genome with Minimap2 and are ordered and oriented according to those alignments. b Normal alignments between a contig and a reference chromosome (top) and example alignments between a reference chromosome and an intrachromosomal chimera (bottom left) and an interchromosomal chimera (bottom right). Red arrows represent potential contig breakpoints