Table 2.
Data summary of the genome sequencing and assembling, and the repetitive elements characterized in the C. xanthocarpa total genome set of sequences
| Sequencing and assembling | |
|---|---|
| Number of sequenced bases | 735,621,315 |
| Estimated coverage | 3.6× |
| Average quality per read (Phred score) | 32 |
| Number of contigs | 5551 |
| N75 contig length (bases) | 1239 |
| N50 contig length (bases) | 1453 |
| N25 contig length (bases) | 1888 |
| Longest contig (bases) | 38,536 |
| Average contig size (bases) | 1538 |
| Total size of contigs (bases) | 8,539,386 |
| GC content | 42% |
| Repetitive elements characterization | Number of elements | Total length (bases) | % of the WGSAS | |
|---|---|---|---|---|
| C. xanthocarpa | E. unifloraa | |||
| Retroelements | 373 | 242,262 | 0.028 | 0.010 |
| LINE elements | ||||
| L1-CIN4 | 45 | 13,848 | 0.002 | 7.43 × 10−5 |
| LTR retrotransposons | ||||
| Ty1-Copia | 262 | 193,438 | 0.023 | 0.007 |
| Gypsy-DIRS1 | 52 | 37,089 | 0.004 | 0.002 |
| DNA transposons | ||||
| hobo-Activator | 8 | 893 | 1.00 × 10−4 | 2.17 × 10−5 |
| Tourist/Harbinger | 3 | 229 | 2.68 × 10−5 | – |
| Unclassified elements | 1 | 68 | 7.96 × 10−6 | 1.49 × 10−5 |
| Small RNA | 20 | 7939 | 0.001 | 8.45 × 10−5 |
| Satellites | 1 | 199 | 2.33 × 10−5 | – |
| Simple repeats | 1730 | 64,379 | 0.008 | 0.002 |
| Low complexity | 467 | 22,515 | 0.003 | 4.00 × 10−4 |
| Total interspersed repeats | – | 256,841 | 0.030 | 0.010 |
The comparison of percentage of each element in relation to the total WGSAS is giving in comparison to Eugenia uniflora
aData from Stefenon et al. (2019)