Table 4.
Genetic characterization of the ten newly developed polymorphic microsatellite loci of Campomanesia xanthocarpa at population level and overall populations (mean value)
| Nuclear | Coronel Freitas | Iomerê | São Joaquim | São José do Cerrito | Overall mean | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A | Ho | HAe | A | Ho | HAe | A | Ho | HAe | A | Ho | HAe | PIC | A | Ho | He | |
| Cxant26 | 3 | 0.375 | 0.377ns | 2 | 0.500 | 0.383ns | 2 | 0.280 | 0.246ns | 2 | 0.400 | 0.327ns | 0.281 | 2.25 | 0.39 | 0.33 |
| Cxant50+ | 4 | 0.040 | 0.257* | 2 | 0.286 | 0.418ns | 4 | 0.333 | 0.669* | 4 | 0.524 | 0.502ns | 0.458 | 3.50 | 0.30 | 0.46 |
| Cxant59 | 2 | 0.520 | 0.510ns | 2 | 0.400 | 0.444ns | 2 | 0.200 | 0.184ns | 3 | 0.520 | 0.554ns | 0.395 | 2.25 | 0.41 | 0.42 |
| Cxant66 | 2 | 0.417 | 0.337ns | 2 | 0.240 | 0.372ns | 3 | 0.560 | 0.598ns | 2 | 0.440 | 0.458ns | 0.399 | 2.25 | 0.41 | 0.44 |
| Cxant69$ | 3 | 0.522 | 0.679ns | 3 | 0.739 | 0.571ns | 2 | 0.840 | 0.497ns | 3 | 0.875 | 0.520ns | 0.504 | 2.75 | 0.74 | 0.57 |
| Cxant76+$ | 7 | 0.261 | 0.744* | 5 | 0.240 | 0.612* | 2 | 0.150 | 0.296ns | 3 | 0.391 | 0.505* | 0.569 | 4.25 | 0.26 | 0.54 |
| Mean | 3.5 | 0.356 | 0.484 | 2.7 | 0.401 | 0.467 | 2.5 | 0.394 | 0.415 | 2.8 | 0.525 | 0.478 | – | – | – | – |
| Organellar | A | h | I | A | h | I | A | h | I | A | h | I | A | h | I | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Guabi05 | 3 | 0.627 | 0.998 | 2 | 0.080 | 0.168 | 4 | 0.577 | 0.994 | 3 | 0.293 | 0.551 | – | 3.00 | 0.39 | 0.68 |
| Guabi11 | 2 | 0.518 | 0.690 | 1 | 0.000 | 0.000 | 1 | 0.000 | 0.000 | 2 | 0.280 | 0.440 | – | 1.50 | 0.20 | 0.28 |
| Cxant22 | 2 | 0.518 | 0.690 | 1 | 0.000 | 0.000 | 1 | 0.000 | 0.000 | 1 | 0.000 | 0.000 | – | 1.25 | 0.13 | 0.17 |
| Mean | 2.3 | 0.554 | 0.792 | 1.3 | 0.027 | 0.056 | 2 | 0.192 | 0.331 | 1.92 | 0.241 | 0.377 | – | – | – | – |
A = number of alleles; Ho = observed heterozygosity (for nuclear loci only); He = expected heterozygosity (for nuclear loci only); PIC = polymorphism information content; h = haploid diversity (for organellar loci only); I = Shannon’s index (for organellar loci only)
ASignificance of deviation from Hardy–Weinberg equilibrium: *P < 0.05; ns = not statistically significant
+Significant evidence of null alleles detected (P < 0.05)
$EST nuclear loci