Table 1.
YH2.0[2] | HX1[6] | NH1.0 | GRCh38[1] | |
---|---|---|---|---|
Population | Southern Chinese | Southern Chinese | Northern Han Chinese | European |
Sequencing methods | HiSeq (fosmid) | PacBio + BioNano | PacBio + 10× Genomics + Bionano | Sanger (BAC + fosmid) |
Assembly software | SOAPdenovo | FALCON | CANU + Supernova | NA |
Scaffold N50 (Mb) | 20.52 | 21.98 | 46.63 | 67.79 |
Contig N50 (Mb) | 0.02 | 8.33 | 3.6 | 56.41 |
No. of scaffolds | 125,643 | 5367 | 5574 | 735 |
No. of gaps | 235,514 | 10,901 | 8484 | 999 |
PhaseBlock N50 (Mb) | 0.48 | NA | 2.16 | NA |
Assembly size (bp) | 2,911,235,363 | 2,934,084,193 | 2,892,287,479 | 3,209,286,105 |
Note: NA, not available.