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. 2019 Sep 5;17(3):229–247. doi: 10.1016/j.gpb.2019.07.002

Table 1.

Statistics for the sequencing and assembly of four reference genomes

YH2.0[2] HX1[6] NH1.0 GRCh38[1]
Population Southern Chinese Southern Chinese Northern Han Chinese European



Sequencing methods HiSeq (fosmid) PacBio + BioNano PacBio + 10× Genomics + Bionano Sanger (BAC + fosmid)



Assembly software SOAPdenovo FALCON CANU + Supernova NA



Scaffold N50 (Mb) 20.52 21.98 46.63 67.79



Contig N50 (Mb) 0.02 8.33 3.6 56.41



No. of scaffolds 125,643 5367 5574 735



No. of gaps 235,514 10,901 8484 999



PhaseBlock N50 (Mb) 0.48 NA 2.16 NA



Assembly size (bp) 2,911,235,363 2,934,084,193 2,892,287,479 3,209,286,105

Note: NA, not available.