Table 1.
TCP gene family in grapevine
| Gene Name | Accession number | Protein | Chrom | Chr srart | Chr end | MW(Da) | pI | Aliphatic index | GRAVY | Loc |
|---|---|---|---|---|---|---|---|---|---|---|
| VvTCP1 | VIT_01s0011g0292.t01 | 438 | Chr1 | 2,574,244 | 2,575,738 | 48,349.63 | 9.43 | 69.04 | −0.562 | nucl: 7.5, golg: 5, cyto_nucl: 4.5 |
| VvTCP2 | VIT_01s0026g0220.t01 | 353 | Chr1 | 11,610,314 | 11,611,375 | 38,054.39 | 8.93 | 62.49 | −0.627 | nucl: 13 |
| VvTCP3 | VIT_02s0025g0459.t01 | 411 | Chr2 | 4,140,127 | 4,141,512 | 43,499.20 | 6.20 | 69.59 | −0.296 | nucl: 13 |
| VvTCP4 | VIT_08s0040g0160.t01 | 204 | Chr8 | 12,723,686 | 12,724,300 | 21,699.26 | 8.46 | 60.83 | −0.507 | nucl: 6, mito: 6, cyto: 2 |
| VvTCP5 | VIT_10s0003g0087.t01 | 382 | Chr10 | 2,112,286 | 2,113,434 | 42,398.40 | 6.40 | 76.65 | −0.519 | nucl: 10, chlo: 1, cyto: 1 |
| VvTCP6 | VIT_10s0003g0391.t01 | 444 | Chr10 | 6,666,048 | 6,667,382 | 48,535.28 | 7.84 | 58.02 | −0.873 | nucl: 13 |
| VvTCP7 | VIT_10s0042g0017.t01 | 255 | Chr10 | 12,942,744 | 12,943,511 | 26,159.42 | 9.71 | 73.29 | −0.234 | nucl: 7, chlo: 3, mito: 3 |
| VvTCP8 | VIT_12s0028g0252.t01 | 307 | Chr12 | 3,281,712 | 3,282,899 | 33,699.77 | 6.41 | 74.04 | −0.386 | nucl: 11, chlo: 2 |
| VvTCP9 | VIT_12s0035g0069.t01 | 460 | Chr12 | 20,150,532 | 20,151,914 | 48,077.84 | 6.57 | 56.37 | −0.668 | nucl: 14 |
| VvTCP10 | VIT_14s0083g0015.t01 | 388 | Chr14 | 22,124,744 | 22,125,983 | 44,040.07 | 9.57 | 68.43 | −0.672 | nucl: 10.5, cyto_nucl: 6.5, chlo: 2 |
| VvTCP11 | VIT_14s0068g0033.t01 | 349 | Chr14 | 24,046,932 | 24,047,981 | 38,623.45 | 8.79 | 76.50 | −0.573 | nucl: 10.5, nucl_plas: 6, chlo: 1 |
| VvTCP12 | VIT_14s0068g0169.t01 | 296 | Chr14 | 25,396,768 | 25,397,658 | 31,511.13 | 9.01 | 68.95 | −0.625 | nucl: 12, chlo: 1 |
| VvTCP13 | VIT_15s0048g0115.t01 | 339 | Chr15 | 15,268,480 | 15,269,562 | 36,052.01 | 8.96 | 72.92 | −0.343 | nucl: 11, cyto: 2 |
| VvTCP14 | VIT_16s0022g0248.t01 | 169 | Chr16 | 15,211,547 | 15,212,056 | 17,721.95 | 6.62 | 80.36 | −0.307 | nucl: 10, cyto: 3 |
| VvTCP15 | VIT_17s0000g0418.t01 | 366 | Chr17 | 4,344,260 | 4,345,620 | 41,570.75 | 8.88 | 66.69 | −0.757 | nucl: 8, cyto: 3, chlo: 1 |
| VvTCP16 | VIT_17s0000g0602.t01 | 369 | Chr17 | 6,588,791 | 6,589,900 | 39,568.76 | 7.20 | 58.73 | −0.640 | nucl: 14 |
| VvTCP17 | VIT_18s0117g0030.t01 | 355 | Chr18 | 23,608,849 | 23,609,916 | 37,106.80 | 6.09 | 60.82 | −0.555 | nucl: 14 |
| VvTCP18 | VIT_19s0014g0168.t01 | 398 | Chr19 | 1,805,797 | 1,806,993 | 43,306.70 | 6.27 | 58.19 | −0.695 | nucl: 14 |
AA amino acid residues, Chrom chromosome, MW molecular weight, pI theoretical isoelectric point, GRAVY grand average of hydropathicity, Loc subcellular location. The subcellular location results of grapevine BBX genes were predicted by WoLF PSORT (https://www.genscript.com/wolf-psort.html). Nucl nucleus, Chlo chloroplast, Cyto cytosol, Mito mitochondria. Testk used for kNN is: 14