Table 3.

Total number of SNPs in the genomic islands, number of SNPs segregating in the group of animals with the rearranged segment, the group of animals with the non-rearranged segment and in both groups for each chromosome

Chromosome	1	2	7	12
Total number of SNPs in the genomic island	132,995	52,160	90,446	65,915
Number of SNPs segregating in the rearranged group	23,126	14,824	17,103	37,129
Number of SNPs segregating in the non-rearranged group	39,338	7841	8923	0
Number of SNPs segregating both in the rearranged and non-rearranged groups	16,706	10,046	16,745	0