Table 2.
Best partitioning scheme applied in the phylogenetic inference of the HBV genome.
| Subset | Best model | Subset partitions | Subset sites |
|---|---|---|---|
| 1 | SYM + G | PPa_1st, PPa_2nd | 1-1063∖3, 2-1063∖3 |
| 2 | GTR + G | PPa_3rd | 3-1063∖3 |
| 3 | SYM + G | SP_1st | 1064-1744∖3 |
| 4 | TrNef + G | SP_2nd | 1065-1744∖3 |
| 5 | SYM + G | SP_3rd | 1066-1744∖3 |
| 6 | SYM + G | CP_2nd, PPb_1st | 1745-2282∖3, 2749-3299∖3 |
| 7 | GTR + G | CP_3rd, PPb_2nd | 1746-2282∖3, 2750-3299∖3 |
| 8 | SYM + G | PPb_3rd | 1747-2282∖3 |
| 9 | GTR + G | XP_1st | 2283-2747∖3 |
| 10 | SYM + G | XP_2nd | 2284-2747∖3 |
| 11 | SYM + G | XP_3rd | 2285-2747∖3 |
| 12 | SYM + G | CP_1st | 2748-3299∖3 |